View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_25 (Length: 362)
Name: NF10041_low_25
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 13882253 - 13881918
Alignment:
| Q |
1 |
gaagaagtttgtggtgaagccagaggagaaaactacatggatgctgatgatgaaggggaagaaagtcctcagaggtcattggaggacagcgaaaatactt |
100 |
Q |
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| T |
13882253 |
gaagaagtttgtggtgaagccagaggagaaaactacatggatgctgatgatgaaggggaagaaagtcctcagaggtcattggaggacagcgaaaatactt |
13882154 |
T |
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| Q |
101 |
ctgaaaatgctgatgtttctggaagcaaatctattgatggtgcgaggatgcagaagcagcagaacatgataataaggctgaaagtgaaggtgaagctgat |
200 |
Q |
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| T |
13882153 |
ctgcaaatgctgatgtttctggaagcaaatctattgatggtgcgaggatgcagaa---------catgataataaggctgaaagtgaaggtgaagctgat |
13882063 |
T |
|
| Q |
201 |
gaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccattttctaaacgtgaagccattggcaaagcatgtaccccatttatgttctta |
300 |
Q |
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| T |
13882062 |
gaaaatggataatgcgcatgaagttgaaggagatggaacgtcattgccattttctaaacgtgaagccattggcaaagcatgtaccccatttatgttctta |
13881963 |
T |
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| Q |
301 |
ctagacattcactcccttctgactttcaaaaccttaattggtttt |
345 |
Q |
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| T |
13881962 |
ctagacattcactcccttctgactttcaaaaccttaattggtttt |
13881918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 16024735 - 16024464
Alignment:
| Q |
1 |
gaagaagtttgtggtgaagccagaggagaaaactacatggatgctgatgatgaaggggaagaaagtcctcagaggtcattggaggacagcgaaaatactt |
100 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||| |
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| T |
16024735 |
gaagaagtttgtggtgaagccagaggagaaaattatgcagatgctgatgatgaaggggaagaaagtcctcagaggtcatcagagggcagtgaaaacgctt |
16024636 |
T |
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| Q |
101 |
ctgaaaatgctgatgtttctggaagcaaatctattgatggtgcgagga-tgc-----aga--agca-------gcagaacatgataataaggctgaaagt |
185 |
Q |
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||| ||| | ||||||||||||||| ||||| ||||| | ||||| ||| ||| |||| | |||||||||| |||||||||||||| |
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| T |
16024635 |
ctggaaacgttgatgtttctggaagtgaatctgctgatg--gagaggagtgctctcaagaagagcatgatgatggagaacatgatgataaggctgaaagt |
16024538 |
T |
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| Q |
186 |
gaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccattttctaaacg |
260 |
Q |
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| T |
16024537 |
gaaggtgaagctgaag-gaatggctgatgcacatgatgttgaaggagatggaacatcattaccattttctgaacg |
16024464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 52 - 253
Target Start/End: Complemental strand, 13884011 - 13883806
Alignment:
| Q |
52 |
gaaggggaagaaagtcctcagaggtcattggaggacagcgaaaatacttctgaaaatgctgatgtttctggaagcaaatctattgatg-----gtgcgag |
146 |
Q |
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| T |
13884011 |
gaaggggaagagagtcctcagaggtcatcggaggatagttaaaatgcttctgaaaatgttgatgtttctggaagcgaatctgttgatgactgatggagaa |
13883912 |
T |
|
| Q |
147 |
gatgcagaagcagcagaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattg |
246 |
Q |
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||| | | || |||||||||||||||||||||||||| |||||||||||| | |||| |||||||||||| ||||||| |||||||| || |||| |
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| T |
13883911 |
catgatgttgaaggagaacatgataataaggctgaaagtggaggtgaagctgaag-cgatggctgatgcgcatgatgttgaagaagatggaaagttattg |
13883813 |
T |
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| Q |
247 |
ccatttt |
253 |
Q |
| |
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||||||| |
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| T |
13883812 |
ccatttt |
13883806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 14397457 - 14397598
Alignment:
| Q |
1 |
gaagaagtttgtggtgaagccagaggagaaaactacatggatgctgatgatgaaggggaagaaagtcctcagaggtcattggaggacagcgaaaatactt |
100 |
Q |
| |
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||||||||||||||||||| ||| |||||| || |||||| | ||||||||||||||||||||||||| ||||||| |||||||| |||||| || |
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| T |
14397457 |
gaagaagtttgtggtgaaggaggagaagaaaattatatggatcttaatgatgaaggggaagaaagtcctcataggtcatcggaggacaatgaaaatggtt |
14397556 |
T |
|
| Q |
101 |
ctgaaaatgctgatgtttctggaagcaaatctattgatggtg |
142 |
Q |
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| T |
14397557 |
ctgaaaatgttgttgtttcaggaagtgaatctactaatggtg |
14397598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 14391174 - 14391312
Alignment:
| Q |
1 |
gaagaagtttgtggtgaagccagaggagaaaactacatggatgctgatgatgaagggga-agaaagtcctcagaggtcattggaggacagcgaaaatact |
99 |
Q |
| |
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|||||| |||||||| ||||||||| |||||| || ||||| |||||||||||| |||||||||||| ||||||| ||||||| ||||| | |
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| T |
14391174 |
gaagaaatttgtggtaaagccagagaagaaaattatatggaa----atgatgaagggggtagaaagtcctcataggtcatccgaggacaatgaaaaaggt |
14391269 |
T |
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| Q |
100 |
tctgaaaatgctgatgtttctggaagcaaatctattgatggtg |
142 |
Q |
| |
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||| |||||| | |||||||||||| | |||||| |||||||| |
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| T |
14391270 |
tctaaaaatgtttatgtttctggaatcgaatctaatgatggtg |
14391312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 14393132 - 14393221
Alignment:
| Q |
161 |
agaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccattttct |
255 |
Q |
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||||| ||||| ||||||||||||||||||||||||| | | |||| | |||| | | |||||||||||||||| |||||||||||||||| |
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| T |
14393132 |
agaacgtgatagtaaggctgaaagtgaaggtgaagctaa--atgatggctaatgcccct---gttgaaggagatggaatgtcattgccattttct |
14393221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 14393011 - 14393043
Alignment:
| Q |
43 |
gctgatgatgaaggggaagaaagtcctcagagg |
75 |
Q |
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| T |
14393011 |
gctgatgatgaaggggaagaaagtcctcggagg |
14393043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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