View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_27 (Length: 357)
Name: NF10041_low_27
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 33223395 - 33223738
Alignment:
| Q |
1 |
agaaagaaagaaacaaaacaagaagcatcaagagactgtggattgcgagattcaaaaaatagtgaaagacttgttttgcctcagacgtgatccacaagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223395 |
agaaagaaagaaacaaaacaagaagcatcaagagactgtggattgcaagattcaagaaatagtgaaagacttgttttgcctcagacgtgatccacaagga |
33223494 |
T |
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| Q |
101 |
tggattattctaagcaaaggatatagcattaaacttcttggtcacggcgagccggcttatcaaactttggttgagtttcagaattggaaagacaaagtgt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223495 |
tggattattctaagcaaaggacatagcattaaacttcttggtcacggcgagccggcttatcaaactttggttgagtttcagaattggaaagacaaagtgt |
33223594 |
T |
|
| Q |
201 |
tggagaaagaagggtttgatattgcatttaaagagtattatcagatgaaggctaaagagatatctggtcgtgaaccatgtgaagttcttaatgttgatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223595 |
tggagaaagaagggtttgatattgcatttaaagagtattatcagatgaaggctaaagagatatctggtcgtgaaccatgtgaagttcttaatgttgatac |
33223694 |
T |
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| Q |
301 |
ctatagttcaaatgttataggtactatatcatgccctaatccta |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223695 |
ctatagttcaaatgttataggtactatatcatgccctaatccta |
33223738 |
T |
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