View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10041_low_29 (Length: 351)

Name: NF10041_low_29
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10041_low_29
NF10041_low_29
[»] chr6 (4 HSPs)
chr6 (90-206)||(12904056-12904172)
chr6 (106-210)||(12929347-12929450)
chr6 (106-207)||(12954792-12954892)
chr6 (255-303)||(12955039-12955087)
[»] chr5 (4 HSPs)
chr5 (95-161)||(10744102-10744168)
chr5 (72-152)||(10744782-10744862)
chr5 (90-160)||(10592337-10592407)
chr5 (95-160)||(10585448-10585513)
[»] chr2 (5 HSPs)
chr2 (106-210)||(17926537-17926640)
chr2 (255-307)||(20379631-20379683)
chr2 (262-335)||(20607335-20607408)
chr2 (286-318)||(2763548-2763580)
chr2 (255-335)||(17792492-17792572)
[»] chr3 (1 HSPs)
chr3 (255-307)||(53293111-53293163)
[»] chr1 (1 HSPs)
chr1 (255-307)||(24114730-24114782)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 90 - 206
Target Start/End: Original strand, 12904056 - 12904172
Alignment:
Q  90 tggcattatcttccacttttctaacccaaaagaaacgattgtcatgttgaaatggtagtatttgtttttatcataaaaatatcatcaataacgtattaag 189  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  12904056 tggcattatcttccagttttctaccccaaaagaaacgattgtcatgttgaaatggttgtatttgtttttatcataaaaatatcatcaataacgtatgaag 12904155  T
Q  190 caggacatgattaatga 206  Q
    |||||||||||||||||    
T  12904156 caggacatgattaatga 12904172  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 12929347 - 12929450
Alignment:
Q  106 ttttctaacccaaaagaaacgattgtcatgttgaaatggtagtatttgtttttatcataaaaatatcatcaataacgtattaagcaggacatgattaatg 205  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||   ||||||||| ||| ||| |||| |||||||||||  ||||||||||||||    
T  12929347 ttttctaccccaaatgaaacgattgtcatgttgaaatggtagtattt-actttatcatagaaacatcgtcaagaacgtattaagagggacatgattaatg 12929445  T
Q  206 atcat 210  Q
    |||||    
T  12929446 atcat 12929450  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 12954792 - 12954892
Alignment:
Q  106 ttttctaacccaaaagaaacgattgtcatgttgaaatggtagtatttgtttttatcataaaaatatcatcaataacgtattaagcaggacatgattaatg 205  Q
    ||||||| |||||| |||||||||||||||||| |||||||||||||   ||||||||| ||| ||| |||| |||||||||||  |||||| |||||||    
T  12954792 ttttctaccccaaatgaaacgattgtcatgttgtaatggtagtattt-actttatcatagaaacatcgtcaagaacgtattaagagggacataattaatg 12954890  T
Q  206 at 207  Q
    ||    
T  12954891 at 12954892  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 12955039 - 12955087
Alignment:
Q  255 ctccaaattgtttttccttcttgtatagtttaataagtaattttcacat 303  Q
    |||||||||||||||| ||||| |||| || ||||||||||||| ||||    
T  12955039 ctccaaattgtttttcattcttttatacttaaataagtaatttttacat 12955087  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 10744168 - 10744102
Alignment:
Q  95 ttatcttccacttttctaacccaaaagaaacgattgtcatgttgaaatggtagtatttgtttttatc 161  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10744168 ttatcttcgagttttctaccccaaaagaaacgattgtcatgttgaaatggtagtatttgtttttatc 10744102  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 10744862 - 10744782
Alignment:
Q  72 gtccacatagtttggcgatggcattatcttccacttttctaacccaaaagaaacgattgtcatgttgaaatggtagtattt 152  Q
    ||||||||||||||||| ||||| ||||||| | ||||||| || |||||||||||||| || | ||||||| ||| ||||    
T  10744862 gtccacatagtttggcgttggcagtatcttcaagttttctaccctaaaagaaacgattgccaagctgaaatgttagaattt 10744782  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 10592407 - 10592337
Alignment:
Q  90 tggcattatcttccacttttctaacccaaaagaaacgattgtcatgttgaaatggtagtatttgtttttat 160  Q
    ||||| ||||||||| ||||||| || |||||||||||||  || | ||||||| ||| ||||||||||||    
T  10592407 tggcagtatcttccagttttctaccctaaaagaaacgatttccaagctgaaatgttagcatttgtttttat 10592337  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 10585448 - 10585513
Alignment:
Q  95 ttatcttccacttttctaacccaaaagaaacgattgtcatgttgaaatggtagtatttgtttttat 160  Q
    |||||||||| ||||||| || |||| | ||||||| || | ||||||| ||||||||||||||||    
T  10585448 ttatcttccagttttctaccctaaaatatacgattgccaagctgaaatgctagtatttgtttttat 10585513  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 17926640 - 17926537
Alignment:
Q  106 ttttctaacccaaaagaaacgattgtcatgttgaaatggtagtatttgtttttatcataaaaatatcatcaataacgtattaagcaggacatgattaatg 205  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||  ||||||||| ||| ||| |||| |||||||||||  ||||| |||||| |    
T  17926640 ttttctaccccaaatgaaacgattgtcatgttgaaatggtagtatttg-ctttatcatagaaacatcgtcaagaacgtattaagagggacaagattaagg 17926542  T
Q  206 atcat 210  Q
    |||||    
T  17926541 atcat 17926537  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 20379631 - 20379683
Alignment:
Q  255 ctccaaattgtttttccttcttgtatagtttaataagtaattttcacatattt 307  Q
    ||||||||||||||||||||||   ||||| ||||||| ||||||||||||||    
T  20379631 ctccaaattgtttttccttctttattagttaaataagttattttcacatattt 20379683  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Complemental strand, 20607408 - 20607335
Alignment:
Q  262 ttgtttttccttcttgtatagtttaataagtaattttcacatatttccagtcttcttaagtttgtgtttgtgat 335  Q
    ||||||||| ||||| | ||||| | ||||| |||||||||||||| |||| |||||  |||||| ||||||||    
T  20607408 ttgtttttctttcttttttagttaactaagtgattttcacatattttcagttttctttcgtttgtttttgtgat 20607335  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 2763580 - 2763548
Alignment:
Q  286 aataagtaattttcacatatttccagtcttctt 318  Q
    |||||||||||||||||||||| ||||||||||    
T  2763580 aataagtaattttcacatattttcagtcttctt 2763548  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 17792492 - 17792572
Alignment:
Q  255 ctccaaattgtttttccttcttgtatagtttaataagtaattttcacatatttccagtcttcttaagtttgtgtttgtgat 335  Q
    ||||| |||||||||| ||||  | ||||| ||||||  |||||||||||||| |||| |||||  |||||| ||||||||    
T  17792492 ctccatattgtttttctttctcttctagttaaataagcgattttcacatattttcagttttctttcgtttgtttttgtgat 17792572  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 53293111 - 53293163
Alignment:
Q  255 ctccaaattgtttttccttcttgtatagtttaataagtaattttcacatattt 307  Q
    |||||||||||||||||||||| | ||||| | ||||| |||||||| |||||    
T  53293111 ctccaaattgtttttccttcttttttagttaagtaagtgattttcacgtattt 53293163  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 24114782 - 24114730
Alignment:
Q  255 ctccaaattgtttttccttcttgtatagtttaataagtaattttcacatattt 307  Q
    |||||||||||||||| ||||| | ||||| ||||||| ||||| ||||||||    
T  24114782 ctccaaattgtttttctttcttttttagttaaataagtgattttaacatattt 24114730  T

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