View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10041_low_3 (Length: 627)

Name: NF10041_low_3
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10041_low_3
NF10041_low_3
[»] chr8 (16 HSPs)
chr8 (1-607)||(23496903-23497498)
chr8 (181-411)||(23269170-23269411)
chr8 (236-296)||(30477701-30477761)
chr8 (179-296)||(13754818-13754936)
chr8 (314-412)||(30477564-30477662)
chr8 (237-292)||(18323007-18323062)
chr8 (191-296)||(26916822-26916929)
chr8 (262-296)||(6928087-6928121)
chr8 (262-296)||(24507517-24507551)
chr8 (235-296)||(17698255-17698316)
chr8 (310-372)||(24677653-24677715)
chr8 (235-296)||(17319602-17319663)
chr8 (316-352)||(4565465-4565501)
chr8 (385-413)||(6928216-6928244)
chr8 (244-296)||(17927683-17927735)
chr8 (309-413)||(17927769-17927873)
[»] chr2 (26 HSPs)
chr2 (95-296)||(45257985-45258183)
chr2 (309-412)||(12168896-12168998)
chr2 (235-296)||(3586423-3586484)
chr2 (176-296)||(27846429-27846550)
chr2 (314-413)||(45258222-45258321)
chr2 (235-296)||(12169033-12169094)
chr2 (314-413)||(12127733-12127832)
chr2 (235-296)||(19919036-19919097)
chr2 (239-296)||(36267558-36267615)
chr2 (173-296)||(45715055-45715179)
chr2 (314-413)||(27846589-27846688)
chr2 (95-167)||(18134487-18134559)
chr2 (339-411)||(19919161-19919233)
chr2 (244-292)||(24499853-24499901)
chr2 (345-412)||(18134274-18134341)
chr2 (314-413)||(45714917-45715016)
chr2 (310-396)||(17626840-17626926)
chr2 (236-286)||(17658030-17658079)
chr2 (236-286)||(17672042-17672091)
chr2 (236-285)||(17626971-17627019)
chr2 (310-403)||(17671905-17671998)
chr2 (337-402)||(36022394-36022459)
chr2 (314-367)||(36267466-36267519)
chr2 (244-296)||(12127642-12127694)
chr2 (235-295)||(15390555-15390615)
chr2 (235-295)||(29711077-29711137)
[»] chr5 (13 HSPs)
chr5 (176-296)||(27083148-27083269)
chr5 (173-293)||(26994513-26994634)
chr5 (184-296)||(20025343-20025456)
chr5 (244-296)||(34493573-34493625)
chr5 (310-413)||(8938832-8938937)
chr5 (173-286)||(8938981-8939095)
chr5 (244-296)||(22903153-22903205)
chr5 (191-294)||(32418410-32418515)
chr5 (314-413)||(20025205-20025304)
chr5 (235-295)||(24647349-24647409)
chr5 (235-295)||(25537466-25537526)
chr5 (177-205)||(29278948-29278976)
chr5 (516-552)||(34535751-34535787)
[»] chr4 (14 HSPs)
chr4 (173-296)||(47253337-47253461)
chr4 (213-296)||(19809761-19809844)
chr4 (176-296)||(2674484-2674605)
chr4 (235-296)||(12683845-12683906)
chr4 (236-296)||(19643762-19643822)
chr4 (236-284)||(50151775-50151823)
chr4 (314-413)||(3981872-3981971)
chr4 (314-367)||(12683753-12683806)
chr4 (229-296)||(19818753-19818822)
chr4 (236-286)||(26894693-26894743)
chr4 (173-202)||(10982019-10982048)
chr4 (176-205)||(39194222-39194251)
chr4 (244-297)||(40979050-40979103)
chr4 (235-295)||(5518601-5518661)
[»] chr3 (15 HSPs)
chr3 (174-296)||(30606988-30607111)
chr3 (237-296)||(9801056-9801115)
chr3 (235-296)||(16704462-16704523)
chr3 (244-296)||(2311813-2311865)
chr3 (244-296)||(8122894-8122946)
chr3 (314-411)||(2311904-2312001)
chr3 (244-297)||(20622467-20622520)
chr3 (244-297)||(28715467-28715520)
chr3 (238-296)||(21342260-21342318)
chr3 (173-296)||(17143656-17143780)
chr3 (314-372)||(21649376-21649434)
chr3 (316-364)||(1770796-1770844)
chr3 (235-295)||(14860069-14860129)
chr3 (179-211)||(28715400-28715432)
chr3 (357-413)||(28715596-28715652)
[»] chr1 (18 HSPs)
chr1 (176-296)||(16030455-16030575)
chr1 (310-377)||(34273045-34273112)
chr1 (176-296)||(5459619-5459740)
chr1 (96-149)||(16522842-16522895)
chr1 (314-403)||(18246075-18246164)
chr1 (244-296)||(2140927-2140979)
chr1 (314-377)||(16050352-16050415)
chr1 (238-296)||(34273147-34273205)
chr1 (255-296)||(22414835-22414876)
chr1 (235-296)||(26977800-26977861)
chr1 (255-296)||(52565640-52565681)
chr1 (100-296)||(5671830-5672023)
chr1 (358-413)||(5671692-5671747)
chr1 (236-286)||(8019018-8019068)
chr1 (238-296)||(16050454-16050512)
chr1 (318-402)||(8018882-8018966)
chr1 (264-296)||(12177446-12177478)
chr1 (314-366)||(26977709-26977761)
[»] chr7 (13 HSPs)
chr7 (176-297)||(16203781-16203903)
chr7 (129-269)||(21161342-21161484)
chr7 (176-297)||(16204350-16204472)
chr7 (176-296)||(26762821-26762942)
chr7 (314-403)||(2226575-2226664)
chr7 (239-292)||(9135335-9135388)
chr7 (310-413)||(29373368-29373471)
chr7 (235-294)||(43172006-43172065)
chr7 (235-292)||(29373510-29373567)
chr7 (184-285)||(13159433-13159532)
chr7 (176-292)||(5863251-5863368)
chr7 (237-296)||(12265097-12265156)
chr7 (264-296)||(9867938-9867970)
[»] chr6 (26 HSPs)
chr6 (176-296)||(3404772-3404893)
chr6 (235-296)||(19305524-19305585)
chr6 (176-296)||(14268491-14268612)
chr6 (237-296)||(20148375-20148434)
chr6 (237-296)||(22184394-22184453)
chr6 (238-296)||(15480314-15480372)
chr6 (176-296)||(34572904-34573025)
chr6 (238-296)||(18147366-18147424)
chr6 (173-296)||(33596921-33597045)
chr6 (195-297)||(689786-689889)
chr6 (244-296)||(12203617-12203669)
chr6 (176-293)||(11087565-11087683)
chr6 (235-290)||(30681058-30681113)
chr6 (229-286)||(9291984-9292041)
chr6 (239-296)||(10115659-10115716)
chr6 (235-296)||(16131028-16131089)
chr6 (236-297)||(17380156-17380217)
chr6 (250-294)||(4251029-4251073)
chr6 (342-413)||(14268357-14268428)
chr6 (237-284)||(27772537-27772584)
chr6 (314-372)||(16343542-16343600)
chr6 (235-296)||(31423807-31423868)
chr6 (244-284)||(9277280-9277320)
chr6 (235-295)||(19277046-19277106)
chr6 (238-286)||(22692162-22692210)
chr6 (235-295)||(34064256-34064316)
[»] scaffold0023 (1 HSPs)
scaffold0023 (173-296)||(95717-95841)
[»] scaffold0054 (1 HSPs)
scaffold0054 (237-296)||(68774-68833)
[»] scaffold0291 (2 HSPs)
scaffold0291 (238-296)||(15403-15461)
scaffold0291 (262-296)||(8574-8608)
[»] scaffold0360 (1 HSPs)
scaffold0360 (238-296)||(13982-14040)
[»] scaffold0002 (1 HSPs)
scaffold0002 (235-297)||(120981-121043)
[»] scaffold0140 (1 HSPs)
scaffold0140 (210-296)||(6358-6445)
[»] scaffold0505 (1 HSPs)
scaffold0505 (339-413)||(7807-7881)
[»] scaffold0057 (1 HSPs)
scaffold0057 (255-296)||(73792-73833)
[»] scaffold0092 (1 HSPs)
scaffold0092 (239-295)||(21592-21648)


Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Original strand, 23496903 - 23497498
Alignment:
Q  1 attcagattcctgagtagcatccgaatcaggactttctgaatccaaacgatctatctgattaatcatgggggacctggcaaatacaggtgtgggcgcgcc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23496903 attcagattcctgagtagcatccgaatcagaactttctgaatccaaacgatctatctgattaatcatgggggaccaggcaaatacaggtgtgggcgcgcc 23497002  T
Q  101 tgaaggaacatgccaactttaatgcaccgcaccgcatcaaagcacgccttcacgtgaggatcaccctgcatgcatgtgtcctctaaccgctccctaatca 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  23497003 tgaaggaacatgccaactttagtgcaccgcaccgcatcaaagcacgccttcacgtgaggatcaccc----tgcatgtgtcctctaaccgctccctaatca 23497098  T
Q  201 cacgcgcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacactttacag 300  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||           
T  23497099 cacgtgcaaaacccggagacaattatcttcacgagcgcctatataagggtgactttgcttaaccctcaaggtatgattcactattcacaacac------- 23497191  T
Q  301 tttacacaaagcattggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgc 400  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23497192 tttacacaaagcgttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccgtacctgagtattttccgccactgttgc 23497291  T
Q  401 ctctcatccatccaaccctagatatgaagtgtttcgtgaaggtgaagaagannnnnnnggtttcccgattttgtttattgaataagattttgaaaaataa 500  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||  ||||||||||||||||||||||    
T  23497292 ctctcatccatccaaccctagatatggagtgtttcgtgaaggtgaagaagatttttttggtttcccgattttgttttatgaataagattttgaaaaataa 23497391  T
Q  501 tcaatttgttgaaagttgaaattgtgtttagagaagaaacatttgtagtggtgagaaaaaacacaaaggaaaagggaagaagcataaccaagttgcgggg 600  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23497392 tcgatttgttgaaagttgaaattgtgtttagagaagaaacatttgtagtggtgagaaaaaatacaaaggaaaagggaagaagcataaccaagttgcgggg 23497491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 181 - 411
Target Start/End: Complemental strand, 23269411 - 23269170
Alignment:
Q  181 ctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacga-gcgcctatgtaagggtgactttgcttaaccctcaaggtatgatt 278  Q
    |||| ||||||||||| |||||||| ||||||| |||||||  ||||| |||  | |||||||| || ||||||| |||||| |||||||||||| ||||    
T  23269411 ctctgaccgctccctattcacacgctgcaaaactcggagacggttatcctcaacacgcgcctatatatgggtgacattgcttcaccctcaaggtacgatt 23269312  T
Q  279 cacttttcaca-acacttta-cagtt----tacaca---aagcattggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgcc 369  Q
    ||||||  ||| || ||||| |||||    |||  |   |||  ||||||||||||| ||| || ||| |||||||||||||| ||||||||||||||||    
T  23269311 cactttctacacactctttatcagttccattactgacttaagtgttggagtgctaacttgcctgtagacacctttcgttccaccgcaaagactcatcgcc 23269212  T
Q  370 accatacctgagtattttccgccactgttgcctctcatccat 411  Q
    ||| |||| ||| ||||||||| ||| |||||||| ||||||    
T  23269211 accgtaccagagcattttccgcaactattgcctcttatccat 23269170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 30477761 - 30477701
Alignment:
Q  236 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  30477761 cgcctatataagggtgacattacttcaccctcaaggtatgattcacttttcacaacacttt 30477701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 179 - 296
Target Start/End: Complemental strand, 13754936 - 13754818
Alignment:
Q  179 tcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgat 277  Q
    ||||||||||| || |||||||||||| |||||| ||| ||||  ||||  ||| | | |||||| |||| ||||||| |||| |||||||||||| |||    
T  13754936 tcctctaaccgttcactaatcacacgccgcaaaatccgaagacggttattctcatgcgtgcctatataagagtgacttagcttcaccctcaaggtaggat 13754837  T
Q  278 tcacttttcacaacacttt 296  Q
    ||||||| |||||||||||    
T  13754836 tcactttacacaacacttt 13754818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 314 - 412
Target Start/End: Complemental strand, 30477662 - 30477564
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatccatc 412  Q
    ||||||||||||| ||| |||||| | |||||||  ||| || ||| ||||| ||||||||||  ||| | ||||||||||||||||||||||||||||    
T  30477662 ttggagtgctaacgtgcatgcagacatctttcgtctcaccgcgaagtctcattgccaccatactggagcactttccgccactgttgcctctcatccatc 30477564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 18323062 - 18323007
Alignment:
Q  237 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaaca 292  Q
    |||||| |||||||||| |||||| | |||||| ||||||||||||||||||||||    
T  18323062 gcctatataagggtgaccttgcttcatcctcaatgtatgattcacttttcacaaca 18323007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 191 - 296
Target Start/End: Original strand, 26916822 - 26916929
Alignment:
Q  191 tccctaatcacacgc-gcaaaacccggagacaattatcttca-cgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcac 288  Q
    ||||||||||||||| |||||||| |||| |  ||||  ||| || |||||||| |||||| ||| |||||| |  |||||||||||| |||||||||||    
T  26916822 tccctaatcacacgccgcaaaacctggaggcggttattctcaacgcgcgcctatataagggcgacattgcttcatgctcaaggtatgactcacttttcac 26916921  T
Q  289 aacacttt 296  Q
    ||||||||    
T  26916922 aacacttt 26916929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 6928087 - 6928121
Alignment:
Q  262 accctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||||||||||||||||||||||||||||||    
T  6928087 accctcaaggtatgattcacttttcacaacacttt 6928121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 24507551 - 24507517
Alignment:
Q  262 accctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||||||||||||||||||||||||||||||    
T  24507551 accctcaaggtatgattcacttttcacaacacttt 24507517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 17698255 - 17698316
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||| || ||||| | |||||| |||||||| |||| |||||||||||||||||||||    
T  17698255 gcgcctatatatgggtggccttgcttcaccctcaaagtataattcacttttcacaacacttt 17698316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 24677653 - 24677715
Alignment:
Q  310 agcattggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccacc 372  Q
    ||||||||||||||||||||| |||||  ||| |||||| ||| |  ||||||||||||||||    
T  24677653 agcattggagtgctaacatgcttgcagccacccttcgtttcaccgtgaagactcatcgccacc 24677715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 17319602 - 17319663
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||| ||| |||||  |||||| |||||| ||| ||||||||||||||||||| ||||    
T  17319602 gcgcctatataaaggtgaacttgcttcaccctcgaggcatgattcacttttcacaactcttt 17319663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 4565465 - 4565501
Alignment:
Q  316 ggagtgctaacatgcgtgcagatacctttcgttccac 352  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  4565465 ggagtgctaacatgcctgcagacacctttcgttccac 4565501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 385 - 413
Target Start/End: Original strand, 6928216 - 6928244
Alignment:
Q  385 tttccgccactgttgcctctcatccatcc 413  Q
    |||||||||||||||||||||||||||||    
T  6928216 tttccgccactgttgcctctcatccatcc 6928244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 17927683 - 17927735
Alignment:
Q  244 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||| | |||||| ||||| |||||||||||||| ||||| ||||||||    
T  17927683 taagggtggcattgcttcacccttaaggtatgattcacctttcataacacttt 17927735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 413
Target Start/End: Original strand, 17927769 - 17927873
Alignment:
Q  309 aagcattggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatc 408  Q
    |||| ||||||||||||| ||| ||||   ||||||||| ||||  |||||| |||||||||||||||  ||  | |||||||||  | ||||||| |||    
T  17927769 aagcgttggagtgctaacgtgcatgcatgcacctttcgtcccaccacaaagagtcatcgccaccatactagaacactttccgccatcgctgcctctaatc 17927868  T
Q  409 catcc 413  Q
    |||||    
T  17927869 catcc 17927873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 1e-52; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 95 - 296
Target Start/End: Original strand, 45257985 - 45258183
Alignment:
Q  95 cgcgcctgaaggaacatgccaactttaatgcaccgcaccgcatcaaagcacgccttcacgtgaggatcaccctgcatgcatgtgtcctctaaccgctccc 194  Q
    ||||| ||||||||||||| ||||||| ||||||||| | |||| |||||||||| |  | |||||||||||||||||    ||||||||||||||||||    
T  45257985 cgcgcttgaaggaacatgcaaactttagtgcaccgcatcacatccaagcacgcctccgtgcgaggatcaccctgcatg----tgtcctctaaccgctccc 45258080  T
Q  195 taatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacac 293  Q
    ||||||||||| ||||||| |||||||  ||||| |||||||  ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45258081 taatcacacgccgcaaaactcggagacggttatcgtcacgaggacctatataagggtgactttgcttcaccctcaaggtatgattcacttttcacaacac 45258180  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 309 - 412
Target Start/End: Complemental strand, 12168998 - 12168896
Alignment:
Q  309 aagcattggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatc 408  Q
    |||| |||||||| |||  ||| |||||| |||||||||||||| ||||||||| |||||||   |||| ||| ||||||||||||||||||||||||||    
T  12168998 aagcgttggagtgttaatgtgcctgcagacacctttcgttccaccgcaaagacttatcgccagg-taccggagcattttccgccactgttgcctctcatc 12168900  T
Q  409 catc 412  Q
    ||||    
T  12168899 catc 12168896  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 3586484 - 3586423
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||| |||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  3586484 gcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacacttt 3586423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 27846429 - 27846550
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacgcgcaaaacccggagacaattatct-tcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 274  Q
    ||||||||||| || ||||||||||||| |||||||||| |||||| |||| | ||| | | | ||||||| |||||||||  ||| ||||||||||||     
T  27846429 gtgtcctctaatcgttccctaatcacacacgcaaaacccagagacagttatttctcaggcgtgtctatgtatgggtgacttaacttcaccctcaaggtac 27846528  T
Q  275 gattcacttttcacaacacttt 296  Q
     ||||||||| |||||||||||    
T  27846529 aattcactttacacaacacttt 27846550  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 314 - 413
Target Start/End: Original strand, 45258222 - 45258321
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatccatcc 413  Q
    |||||||| |||| ||| |||||| | |||||||||||| || ||||||||||||||||||| |  || |||||||  ||| ||||||||||||||||||    
T  45258222 ttggagtgttaacgtgcctgcagacatctttcgttccaccgcgaagactcatcgccaccatatcaaagcattttccatcaccgttgcctctcatccatcc 45258321  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 12169094 - 12169033
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||| |||||||| | |||||| ||||||||||||| |||||||||||||||||||||    
T  12169094 gcgcctatttaagggtggcattgcttcaccctcaaggtataattcacttttcacaacacttt 12169033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 413
Target Start/End: Original strand, 12127733 - 12127832
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatccatcc 413  Q
    ||||||||||||| ||| ||||| |||||||||| |||| || ||||| |||| ||||| ||||  || |||||| |||| |||||||||||||| ||||    
T  12127733 ttggagtgctaacgtgcctgcaggtacctttcgtcccaccgcgaagacccatcaccaccgtaccgaagcattttctgccaatgttgcctctcatctatcc 12127832  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 19919036 - 19919097
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||| |||| ||||  |||||| | |||||||||||||||||||||||||||||||||    
T  19919036 gcgcctatataagagtgatattgcttcatcctcaaggtatgattcacttttcacaacacttt 19919097  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 36267615 - 36267558
Alignment:
Q  239 ctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||| |||||||||  |||||| |||||||||||||||||||||||||||||| ||||    
T  36267615 ctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacccttt 36267558  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 296
Target Start/End: Complemental strand, 45715179 - 45715055
Alignment:
Q  173 catgtgtcctctaaccgctccctaatcacacgcg-caaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaagg 271  Q
    ||||||||||||||| |||| ||||||||||||  || | | | |||||| ||||  ||||| | || |||  ||||||||||| |||| ||| ||||||    
T  45715179 catgtgtcctctaactgctctctaatcacacgccacatatctcagagacagttattctcacgcgtgcttatacaagggtgacttagcttcaccttcaagg 45715080  T
Q  272 tatgattcacttttcacaacacttt 296  Q
    ||||||||| ||||||| |||||||    
T  45715079 tatgattcaattttcaccacacttt 45715055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 314 - 413
Target Start/End: Original strand, 27846589 - 27846688
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatccatcc 413  Q
    ||||||||||||| ||| |||||  || |||||| | ||||| ||||||||| |||||| |||| ||  |  ||||| ||||||||||||||||||||||    
T  27846589 ttggagtgctaacgtgcctgcaggcacttttcgtccaactgcgaagactcattgccaccgtaccggaacacattccgtcactgttgcctctcatccatcc 27846688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 18134559 - 18134487
Alignment:
Q  95 cgcgcctgaaggaacatgccaactttaatgcaccgcaccgcatcaaagcacgccttcacgtgaggatcaccct 167  Q
    |||||||||||||| |||||||||||| |||||| |||| |||| || ||||||  |||| ||||| ||||||    
T  18134559 cgcgcctgaaggaatatgccaactttagtgcaccacaccacatctaaacacgcccccacgcgaggaccaccct 18134487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 19919161 - 19919233
Alignment:
Q  339 acctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatccat 411  Q
    ||||||||||||||  | |||||| |||||||||||||| ||| | |||| |||||  |||||||||||||||    
T  19919161 acctttcgttccaccacgaagactgatcgccaccataccggagcactttctgccaccattgcctctcatccat 19919233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 24499901 - 24499853
Alignment:
Q  244 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaaca 292  Q
    |||||||||  |||||| ||||| |||||||||||||||||||||||||    
T  24499901 taagggtgaacttgcttcacccttaaggtatgattcacttttcacaaca 24499853  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 18134341 - 18134274
Alignment:
Q  345 cgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatccatc 412  Q
    |||||||| || |||| |||||| |||| |||| ||| |||||||||||| |||| ||||||||||||    
T  18134341 cgttccaccgcgaagaatcatcgtcaccctaccggagcattttccgccaccgttgtctctcatccatc 18134274  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 45715016 - 45714917
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatccatcc 413  Q
    ||||||||||||| ||| ||||   ||||||||||||||    ||||||||||||||   |||| ||| | ||||||||| ||||||| |||||||||||    
T  45715016 ttggagtgctaacgtgcctgcatgcacctttcgttccaccaggaagactcatcgccaatgtaccggagcactttccgccattgttgccactcatccatcc 45714917  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 396
Target Start/End: Complemental strand, 17626926 - 17626840
Alignment:
Q  310 agcattggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactg 396  Q
    |||||||||| |||||| ||  |||||| ||||||||||||||   ||||||||||||||||  ||||  || | ||||||||||||    
T  17626926 agcattggagagctaacgtgtctgcagacacctttcgttccaccataaagactcatcgccactgtaccaaagcactttccgccactg 17626840  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 17658079 - 17658030
Alignment:
Q  236 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttc 286  Q
    ||||||| |||||||||||| |||| |||| ||||||||||||||||||||    
T  17658079 cgcctatttaagggtgacttagcttcaccc-caaggtatgattcacttttc 17658030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 17672091 - 17672042
Alignment:
Q  236 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttc 286  Q
    ||||||| |||||||||||| |||| |||| ||||||||||||||||||||    
T  17672091 cgcctatttaagggtgacttagcttcaccc-caaggtatgattcacttttc 17672042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 17627019 - 17626971
Alignment:
Q  236 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcactttt 285  Q
    ||||||| |||||||||||| |||| |||| |||||||||||||||||||    
T  17627019 cgcctatttaagggtgacttagcttcaccc-caaggtatgattcactttt 17626971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 17671998 - 17671905
Alignment:
Q  310 agcattggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctc 403  Q
    |||||||||| |||||| ||  |||||| ||||||||||||||    |||||||||||||||  |||| ||| | |||||||||  ||||||||    
T  17671998 agcattggagcgctaacgtgtctgcagacacctttcgttccaccatgaagactcatcgccactgtaccagagcactttccgccatggttgcctc 17671905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 36022459 - 36022394
Alignment:
Q  337 atacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcct 402  Q
    ||||||||||||| ||| ||||||||||| |||||| || | ||| | ||||||| ||||||||||    
T  36022459 atacctttcgttctactacaaagactcattgccaccgtatcagagaactttccgctactgttgcct 36022394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 36267519 - 36267466
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcg 367  Q
    |||||||| |||||||| |||||  ||||||| ||||||||| |||||||||||    
T  36267519 ttggagtgttaacatgcatgcaggcacctttcattccactgcgaagactcatcg 36267466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 12127642 - 12127694
Alignment:
Q  244 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||| |||| |||||| |||  ||| ||||||||||||||||||||||||||    
T  12127642 taaggttgacattgcttcaccaccaaagtatgattcacttttcacaacacttt 12127694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 15390555 - 15390615
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacactt 295  Q
    |||||||| |||||||||  |||||| ||||||||||||    ||||||||||||||||||    
T  15390555 gcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacactt 15390615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 29711137 - 29711077
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacactt 295  Q
    |||||||| |||||||||  |||||| ||||||||||||    ||||||||||||||||||    
T  29711137 gcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacactt 29711077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 27083148 - 27083269
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 274  Q
    |||||||||||| |||| |||||||||||| |||||||| ||||||| ||||  ||||| ||||||||| |||||||||||  ||| |||||||||||||    
T  27083148 gtgtcctctaactgctctctaatcacacgccgcaaaacctggagacagttattctcacgcgcgcctatgcaagggtgacttaacttcaccctcaaggtat 27083247  T
Q  275 gattcacttttcacaacacttt 296  Q
    ||||||||||||||||||||||    
T  27083248 gattcacttttcacaacacttt 27083269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 173 - 293
Target Start/End: Original strand, 26994513 - 26994634
Alignment:
Q  173 catgtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaatta-tcttcacgagcgcctatgtaagggtgactttgcttaaccctcaag 270  Q
    |||||||||||||| || ||||||||||||||| ||||||| || ||||  ||| |||  ||| |||||||| |||||||||| |||||| |||| ||||    
T  26994513 catgtgtcctctaatcg-tccctaatcacacgccgcaaaactcgaagacggttactctcaacgcgcgcctatataagggtgaccttgcttcacccccaag 26994611  T
Q  271 gtatgattcacttttcacaacac 293  Q
    |||||||||||||||||||||||    
T  26994612 gtatgattcacttttcacaacac 26994634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 184 - 296
Target Start/End: Complemental strand, 20025456 - 20025343
Alignment:
Q  184 taaccgctccctaatcacacgcg-caaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcact 282  Q
    ||||| |||||||||||||| |  ||||||||||||||  ||||  ||||| |||||| | |||||||||| | |||| |||||||||| ||||||||||    
T  20025456 taaccactccctaatcacacaccacaaaacccggagacggttattctcacgcgcgcctgtataagggtgacctagcttcaccctcaaggaatgattcact 20025357  T
Q  283 tttcacaacacttt 296  Q
    || |||||||||||    
T  20025356 ttacacaacacttt 20025343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 34493625 - 34493573
Alignment:
Q  244 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||||||| | || |||||||||||||||||||||||||||||||||||    
T  34493625 taagggtgacttagtttcaccctcaaggtatgattcacttttcacaacacttt 34493573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 310 - 413
Target Start/End: Complemental strand, 8938937 - 8938832
Alignment:
Q  310 agcattggagtgctaacatgcgtgcagatacctttcgttccactgca--aagactcatcgccaccatacctgagtattttccgccactgttgcctctcat 407  Q
    |||||||||||| |||| ||| ||||   ||||||||||| || |||  |||||||||||||||| |||| ||| | ||||||||||  |||||||||||    
T  8938937 agcattggagtgttaacgtgcctgcatgcacctttcgttctaccgcacaaagactcatcgccaccgtaccagagcactttccgccaccattgcctctcat 8938838  T
Q  408 ccatcc 413  Q
    ||||||    
T  8938837 ccatcc 8938832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 173 - 286
Target Start/End: Complemental strand, 8939095 - 8938981
Alignment:
Q  173 catgtgtcctctaaccgctccctaatcacacg-cgcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaagg 271  Q
    |||||||||||||||||||||||||||||||| |||| | ||||||| || ||||  ||||      |||| ||| |||||||| |||| |||||||| |    
T  8939095 catgtgtcctctaaccgctccctaatcacacgccgcatatcccggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatg 8938996  T
Q  272 tatgattcacttttc 286  Q
    |||||||||||||||    
T  8938995 tatgattcacttttc 8938981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 22903205 - 22903153
Alignment:
Q  244 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||||  ||| || |||||||||||||||||||||||||||||||||||    
T  22903205 taagggtgatattgtttcaccctcaaggtatgattcacttttcacaacacttt 22903153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 32418410 - 32418515
Alignment:
Q  191 tccctaatcacacgc-gcaaaacccggagacaattat-cttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcac 288  Q
    ||||||||||||||| ||| |||||||||||| |||  ||| |||  || ||||  ||||||||  |||||| | ||||||||||||||||||| |||||    
T  32418410 tccctaatcacacgccgcataacccggagacagttaagcttaacgcacgtctatacaagggtgaacttgcttcatcctcaaggtatgattcactcttcac 32418509  T
Q  289 aacact 294  Q
    ||||||    
T  32418510 aacact 32418515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 20025304 - 20025205
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatccatcc 413  Q
    |||||||| |||| || ||||||| ||||||||| |||| || ||||||||| | |||| ||||  || |  ||||||||||  ||||||||||||||||    
T  20025304 ttggagtgttaacgtgtgtgcagacacctttcgtcccaccgcgaagactcattgacaccgtaccaaagcacattccgccactagtgcctctcatccatcc 20025205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 24647409 - 24647349
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacactt 295  Q
    |||||||| |||||||||  |||||| ||||| |||||||   ||||||||||||||||||    
T  24647409 gcgcctatataagggtgaacttgcttcacccttaaggtatacatcacttttcacaacactt 24647349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 25537526 - 25537466
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacactt 295  Q
    |||||||| |||||||||  || ||| |||||||||||||   ||||||||||||||||||    
T  25537526 gcgcctatataagggtgaactttcttcaccctcaaggtatacatcacttttcacaacactt 25537466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 29278948 - 29278976
Alignment:
Q  177 tgtcctctaaccgctccctaatcacacgc 205  Q
    |||||||||||||||||||||||||||||    
T  29278948 tgtcctctaaccgctccctaatcacacgc 29278976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 552
Target Start/End: Complemental strand, 34535787 - 34535751
Alignment:
Q  516 ttgaaattgtgtttagagaagaaacatttgtagtggt 552  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  34535787 ttgaagttgtgtttggagaagaaacatttgtagtggt 34535751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 173 - 296
Target Start/End: Complemental strand, 47253461 - 47253337
Alignment:
Q  173 catgtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaagg 271  Q
    ||||||||||||||  |||| |||||||||| | |||||||||||||||| ||||  ||| | |||||||| |||||||||||| |||| ||||||||||    
T  47253461 catgtgtcctctaattgctctctaatcacacaccgcaaaacccggagacagttattatcatgcgcgcctatataagggtgacttagcttcaccctcaagg 47253362  T
Q  272 tatgattcacttttcacaacacttt 296  Q
    |||||||||||||||||||||||||    
T  47253361 tatgattcacttttcacaacacttt 47253337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 19809844 - 19809761
Alignment:
Q  213 ccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||||||| ||||  ||||| ||||||||||||||||||||| | || ||||||||||||| |||||||||||||||||||||    
T  19809844 ccggagacagttattctcacgcgcgcctatgtaagggtgacttagtttcaccctcaaggtataattcacttttcacaacacttt 19809761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 2674484 - 2674605
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttca-cgagcgcctatgtaagggtgactttgcttaaccctcaaggta 273  Q
    |||||||||||| | ||||||||||||||| |||||| ||||||||  ||||  ||| || |||| ||| |||||||||  || ||| | ||||||||||    
T  2674484 gtgtcctctaactg-tccctaatcacacgccgcaaaatccggagacggttatgctcaacgcgcgcttatataagggtgaacttacttcatcctcaaggta 2674582  T
Q  274 tgattcacttttcacaacacttt 296  Q
    |||||||||||||||||||||||    
T  2674583 tgattcacttttcacaacacttt 2674605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 12683906 - 12683845
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||  |||||||||  |||||| ||||| |||||||||||||||||||||||||||||    
T  12683906 gcgcctagataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacacttt 12683845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 19643822 - 19643762
Alignment:
Q  236 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||||| |||||||||  ||| || ||||||||||||||||||||||||||||| |||||    
T  19643822 cgcctatataagggtgaacttgtttcaccctcaaggtatgattcacttttcacaagacttt 19643762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 50151775 - 50151823
Alignment:
Q  236 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttt 284  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  50151775 cgcctatataagggtgactttgcttcaccctcaaggtatgatttacttt 50151823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 3981971 - 3981872
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatccatcc 413  Q
    ||||||||||||| ||| ||||   |||||||||||||| |  ||||||||||  |||  |||| ||  |||||||||||| ||||||||||||||||||    
T  3981971 ttggagtgctaacgtgcatgcatgcacctttcgttccaccgtgaagactcatcctcactgtaccggaacattttccgccaccgttgcctctcatccatcc 3981872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 12683806 - 12683753
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcg 367  Q
    ||||||||||||| ||| |||||  |||||||||||||| ||||||||||||||    
T  12683806 ttggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagactcatcg 12683753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 19818822 - 19818753
Alignment:
Q  229 tcacgagcgcctatgtaaggg--tgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||| |||||||||||||||  |||||| | || | | ||||||||| |||||||||||||||||||||    
T  19818822 tcacgtgcgcctatgtaagggcgtgacttagtttcatcatcaaggtataattcacttttcacaacacttt 19818753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 26894693 - 26894743
Alignment:
Q  236 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttc 286  Q
    ||||||| |||| ||||| || |||||||||||||||| ||||||||||||    
T  26894693 cgcctatataagtgtgacatttcttaaccctcaaggtacgattcacttttc 26894743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 202
Target Start/End: Complemental strand, 10982048 - 10982019
Alignment:
Q  173 catgtgtcctctaaccgctccctaatcaca 202  Q
    ||||||||||||||||||||||||||||||    
T  10982048 catgtgtcctctaaccgctccctaatcaca 10982019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 39194251 - 39194222
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacgc 205  Q
    ||||||||||||||||||||||||||||||    
T  39194251 gtgtcctctaaccgctccctaatcacacgc 39194222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 40979050 - 40979103
Alignment:
Q  244 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttta 297  Q
    ||||||||||||  ||| ||||||||| || |||||||||||||| ||||||||    
T  40979050 taagggtgacttaacttcaccctcaagatacgattcacttttcaccacacttta 40979103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 5518661 - 5518601
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacactt 295  Q
    |||||||| |||||||||  |||||| |||||||||||| |  ||||||| ||||||||||    
T  5518661 gcgcctatataagggtgaacttgcttcaccctcaaggtacgcatcactttccacaacactt 5518601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 174 - 296
Target Start/End: Complemental strand, 30607111 - 30606988
Alignment:
Q  174 atgtgtcctctaaccgctccctaatcacacgcg-caaaacccggagacaattat-cttcacgagcgcctatgtaagggtgactttgcttaaccctcaagg 271  Q
    |||||||||||||||| |||||||||||||||| | ||||||||||||| |||| ||| ||| |||||||| |||||||| | || ||| ||||||||||    
T  30607111 atgtgtcctctaaccg-tccctaatcacacgcggcgaaacccggagacagttattcttaacgcgcgcctatataagggtggccttacttcaccctcaagg 30607013  T
Q  272 tatgattcacttttcacaacacttt 296  Q
    ||| |||||||||||||||||||||    
T  30607012 tataattcacttttcacaacacttt 30606988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 9801056 - 9801115
Alignment:
Q  237 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  9801056 gcctatataagggtgacattgcttcaccctcaaggtatgattcacttttcacaacacttt 9801115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 16704523 - 16704462
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||| |||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  16704523 gcgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacacttt 16704462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 2311813 - 2311865
Alignment:
Q  244 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||||||||||    
T  2311813 taagggtgacattgcttcaccctcaaggtatgattcacctttcacaacacttt 2311865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 8122894 - 8122946
Alignment:
Q  244 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| ||||    
T  8122894 taagggtgacattgcttcaccctcaaggtatgattcacttttcacaacgcttt 8122946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 314 - 411
Target Start/End: Original strand, 2311904 - 2312001
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatccat 411  Q
    ||||||||||||| |   |||||| ||||||| ||||||  | ||||||| |||||||| |||| ||| | ||| |||||||||||||||||||||||    
T  2311904 ttggagtgctaacgtatctgcagacacctttcattccaccacgaagactcttcgccaccgtaccggagcactttgcgccactgttgcctctcatccat 2312001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 20622520 - 20622467
Alignment:
Q  244 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttta 297  Q
    |||||||||  |||||| |||||||||||||||||||||||||||| |||||||    
T  20622520 taagggtgaacttgcttcaccctcaaggtatgattcacttttcacaccacttta 20622467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 28715467 - 28715520
Alignment:
Q  244 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttta 297  Q
    |||||||||  ||| || ||||||||||||||||||||||||||||||||||||    
T  28715467 taagggtgatattgtttcaccctcaaggtatgattcacttttcacaacacttta 28715520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 21342260 - 21342318
Alignment:
Q  238 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||| ||||||| || || ||| |||||||| ||||||||||||||||||||||||||    
T  21342260 cctatataagggtaaccttacttcaccctcaatgtatgattcacttttcacaacacttt 21342318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 173 - 296
Target Start/End: Original strand, 17143656 - 17143780
Alignment:
Q  173 catgtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcac-gagcgcctatgtaagggtgactttgcttaaccctcaag 270  Q
    |||||||||||||  || ||||||||||||||| || ||||||| || || |||| ||||  |  ||| ||| |||||||||  ||| || |||| ||||    
T  17143656 catgtgtcctctagtcg-tccctaatcacacgccgcgaaacccgaaggcagttattttcaatgcacgcttatataagggtgatgttgtttcacccccaag 17143754  T
Q  271 gtatgattcacttttcacaacacttt 296  Q
    ||||||||||||||||||||||||||    
T  17143755 gtatgattcacttttcacaacacttt 17143780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 21649434 - 21649376
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccacc 372  Q
    |||| |||||||| ||| |||||  |||||||||||||| || ||||||||||||||||    
T  21649434 ttggggtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcatcgccacc 21649376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 1770844 - 1770796
Alignment:
Q  316 ggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactca 364  Q
    ||||| ||||||||| |||||| ||||||| |||||| |||||||||||    
T  1770844 ggagtactaacatgcttgcagacacctttccttccaccgcaaagactca 1770796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 14860069 - 14860129
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacactt 295  Q
    |||||||| |||||||||  |||||| ||||||||||||    ||||||||||||||||||    
T  14860069 gcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacactt 14860129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 28715400 - 28715432
Alignment:
Q  179 tcctctaaccgctccctaatcacacgcgcaaaa 211  Q
    ||||||||||||||||||||||||| |||||||    
T  28715400 tcctctaaccgctccctaatcacacccgcaaaa 28715432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 28715596 - 28715652
Alignment:
Q  357 aagactcatcgccaccatacctgagtattttccgccactgttgcctctcatccatcc 413  Q
    ||||||||| ||||| ||||| ||  | ||||||||||| |||||||||||||||||    
T  28715596 aagactcattgccacaataccggaacactttccgccacttttgcctctcatccatcc 28715652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 176 - 296
Target Start/End: Complemental strand, 16030575 - 16030455
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacgcg-caaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 274  Q
    |||| |||||||||||||||||||||||||  ||||| ||||||  | ||||||||| | |||||||| |||||||| ||| ||||  ||||||||||||    
T  16030575 gtgttctctaaccgctccctaatcacacgccacaaaatccggagt-agttatcttcatgtgcgcctatataagggtggcttagcttcgccctcaaggtat 16030477  T
Q  275 gattcacttttcacaacacttt 296  Q
    ||||||||||||||||||||||    
T  16030476 gattcacttttcacaacacttt 16030455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 34273112 - 34273045
Alignment:
Q  310 agcattggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacc 377  Q
    ||||||||||||||||| ||| ||||| |||||||||| |||| |||||||||| |||||||| ||||    
T  34273112 agcattggagtgctaacgtgcttgcaggtacctttcgtcccaccgcaaagactcctcgccaccgtacc 34273045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 5459619 - 5459740
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 274  Q
    ||||||| |||| ||||||||||||||||| ||||||| ||| |||  ||||  ||||| ||| |||||| ||| ||||||  ||| | || ||| ||||    
T  5459619 gtgtcctttaactgctccctaatcacacgccgcaaaacacggtgacggttattctcacgcgcgtctatgttaggctgacttaacttcatccccaatgtat 5459718  T
Q  275 gattcacttttcacaacacttt 296  Q
    |||||||||| |||||||||||    
T  5459719 gattcactttacacaacacttt 5459740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 16522895 - 16522842
Alignment:
Q  96 gcgcctgaaggaacatgccaactttaatgcaccgcaccgcatcaaagcacgcct 149  Q
    ||||||||||||||||||||||| || ||||||||| |||||| ||||||||||    
T  16522895 gcgcctgaaggaacatgccaactctagtgcaccgcatcgcatccaagcacgcct 16522842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 18246164 - 18246075
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctc 403  Q
    |||||||| |||| ||| | |||| |||||||||||||| || |||||||||| ||||| |||| |||||| ||||||||  ||||||||    
T  18246164 ttggagtgttaacgtgcttacagacacctttcgttccaccgccaagactcatcaccaccgtaccagagtatcttccgccatcgttgcctc 18246075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 2140927 - 2140979
Alignment:
Q  244 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||||||| |||| |||||||||||||| |||||||| |||||||||||    
T  2140927 taagggtgacttagcttcaccctcaaggtatggttcactttccacaacacttt 2140979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 16050415 - 16050352
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacc 377  Q
    ||||||||||||| ||| ||||||||||||||  ||||| || ||||||||||||||| |||||    
T  16050415 ttggagtgctaacgtgcctgcagatacctttctatccaccgcgaagactcatcgccactatacc 16050352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 34273205 - 34273147
Alignment:
Q  238 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||| |||||| ||| |||||| ||||||||||||||| ||||||| |||||||||||    
T  34273205 cctatataagggcgacattgcttcaccctcaaggtatgagtcactttacacaacacttt 34273147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 22414876 - 22414835
Alignment:
Q  255 ttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  22414876 ttgcttcaccctcaagatatgattcacttttcacaacacttt 22414835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 26977861 - 26977800
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||| ||||||| |  |||||| ||||||||||||||||||| ||||||||| |||||    
T  26977861 gcgcctatataagggtcaaattgcttcaccctcaaggtatgattcatttttcacaatacttt 26977800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 52565681 - 52565640
Alignment:
Q  255 ttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  52565681 ttgcttcaccctcaagttatgattcacttttcacaacacttt 52565640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 296
Target Start/End: Complemental strand, 5672023 - 5671830
Alignment:
Q  100 ctgaaggaacatgccaactttaatgcaccgcaccgcatcaaagcacgccttcacgtgaggatcaccctgcatgcatgtgtcctctaaccgctccctaatc 199  Q
    ||||||||||| |||||||||| ||||| ||||| |||| || |||| || |||| ||||||||||||  || ||  |||||||| |||||| |||||||    
T  5672023 ctgaaggaacacgccaactttagtgcactgcaccacatccaaacacgtctccacgcgaggatcaccct--ataca--tgtcctcttaccgct-cctaatc 5671929  T
Q  200 acacg-cgcaaaacccggagacaattatcttc-acgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||  |||||||  |||     |||| ||| | | ||| |||| |||| |||||||  ||| ||| |||| ||||||||||||||||||||||||||    
T  5671928 acacgatgcaaaacttggacgtggttattttcaatgcgcgtctatataagagtgacttaacttcaccttcaatgtatgattcacttttcacaacacttt 5671830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 5671747 - 5671692
Alignment:
Q  358 agactcatcgccaccatacctgagtattttccgccactgttgcctctcatccatcc 413  Q
    ||||||||||||||| || | ||| ||||||| ||||||||||||||| |||||||    
T  5671747 agactcatcgccaccgtatcagagcattttccaccactgttgcctctcgtccatcc 5671692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 8019068 - 8019018
Alignment:
Q  236 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttc 286  Q
    ||||||| |||||||||| | |||| |||| ||||||||||||||||||||    
T  8019068 cgcctatataagggtgacatagcttcacccccaaggtatgattcacttttc 8019018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 16050512 - 16050454
Alignment:
Q  238 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||| |||||||| | |||||| | |||||||||||| |||||||||||| |||||||    
T  16050512 cctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacacttt 16050454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 8018966 - 8018882
Alignment:
Q  318 agtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcct 402  Q
    ||||||||| ||| || ||||||||||||| ||||  | |||||||||||||||| |||| ||| | ||||| |||  |||||||    
T  8018966 agtgctaacgtgcctgtagatacctttcgtcccaccacgaagactcatcgccaccgtaccggagcactttccaccaacgttgcct 8018882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 12177478 - 12177446
Alignment:
Q  264 cctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||||||||| |||||||||||||||||||||    
T  12177478 cctcaaggtataattcacttttcacaacacttt 12177446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 26977761 - 26977709
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatc 366  Q
    ||||||||||||| ||| |||||  |||||||||||||| ||||||| |||||    
T  26977761 ttggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagattcatc 26977709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 176 - 297
Target Start/End: Complemental strand, 16203903 - 16203781
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacgcg-caaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 274  Q
    ||||||||||||||||||||||||||||||  | |||| |||||||  |||||  | ||||| ||||| ||||||||||||| ||| ||||| |||||||    
T  16203903 gtgtcctctaaccgctccctaatcacacgccacgaaacacggagacggttatcaacgcgagctcctatataagggtgacttttcttcacccttaaggtat 16203804  T
Q  275 gattcacttttcacaacacttta 297  Q
    | ||||||||||| |||||||||    
T  16203803 ggttcacttttcataacacttta 16203781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 129 - 269
Target Start/End: Complemental strand, 21161484 - 21161342
Alignment:
Q  129 gcaccgcatcaaagcacgccttcacgtgaggatcaccctgcatgcatgtgtcctctaaccgctccctaatcaca-----cgc-gcaaaacccggagacaa 222  Q
    |||||||||  |||||||||| | ||| ||||||||||| || |    ||||||| ||||||||||||||||||     ||| |||||||  ||| |||     
T  21161484 gcaccgcattcaagcacgcctccgcgttaggatcacccttcacg----tgtcctccaaccgctccctaatcacatcacacgctgcaaaacttggaaacag 21161389  T
Q  223 ttatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaa 269  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  21161388 ttatcttcacgagcgcctatgtaagggtgactttgcttcaccctcaa 21161342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 176 - 297
Target Start/End: Complemental strand, 16204472 - 16204350
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacgcgca--aaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggta 273  Q
    |||||||||||||||||||||||||||||| ||  |||| |||||||  |||||  | || || ||||| ||||||||| ||| ||| ||||| ||||||    
T  16204472 gtgtcctctaaccgctccctaatcacacgc-catgaaacacggagacggttatcaacgcgggctcctatataagggtgaattttcttcacccttaaggta 16204374  T
Q  274 tgattcacttttcacaacacttta 297  Q
    || |||||||||||||||||||||    
T  16204373 tggttcacttttcacaacacttta 16204350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 26762821 - 26762942
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacgcgc-aaaacccggagacaattatcttcacga-gcgcctatgtaagggtgactttgcttaaccctcaaggta 273  Q
    |||||||||||||| ||||||||||||||| | |||||||||||    |||||  ||  | |||||||| || ||||| | |||||| ||||||||||||    
T  26762821 gtgtcctctaaccg-tccctaatcacacgccccaaaacccggaggtggttatcaacaacacgcgcctatatatgggtgtccttgcttcaccctcaaggta 26762919  T
Q  274 tgattcacttttcacaacacttt 296  Q
    |||||||||||||||||||||||    
T  26762920 tgattcacttttcacaacacttt 26762942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 2226664 - 2226575
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctc 403  Q
    ||||||||||||  ||| |||||| ||||||||| |||| |  |||| |||||||||| ||||| ||| |||||||||||||||||||||    
T  2226664 ttggagtgctaatgtgcctgcagacacctttcgtcccaccgtgaagattcatcgccactataccagagcattttccgccactgttgcctc 2226575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 9135335 - 9135388
Alignment:
Q  239 ctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaaca 292  Q
    |||| ||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  9135335 ctatataagggtgaatttgcttcaccctcaaggtatgattcacttttcacaaca 9135388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 413
Target Start/End: Complemental strand, 29373471 - 29373368
Alignment:
Q  310 agcattggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatcc 409  Q
    ||||||||||| ||||||||| ||||   |||||||||| ||| ||||| ||||||| ||||| |||| ||  ||||||| ||||| ||||||||||||     
T  29373471 agcattggagtcctaacatgcctgcatgcacctttcgtttcaccgcaaaaactcatcaccaccgtaccagaacattttccaccactattgcctctcatct 29373372  T
Q  410 atcc 413  Q
    ||||    
T  29373371 atcc 29373368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 43172006 - 43172065
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacact 294  Q
    |||||||| |||||||||  |||||| |||||||| ||||||||||||||||||||||||    
T  43172006 gcgcctatataagggtgaagttgcttcaccctcaatgtatgattcacttttcacaacact 43172065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 29373567 - 29373510
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaaca 292  Q
    |||||||| | |||||||| |||||| ||||||||||||||||||| |||||||||||    
T  29373567 gcgcctatatgagggtgacattgcttcaccctcaaggtatgattcaattttcacaaca 29373510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 285
Target Start/End: Complemental strand, 13159532 - 13159433
Alignment:
Q  184 taaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcact 282  Q
    |||||||||||||||||||||| |||||||||| || || ||| | ||||  |||||||| ||||||||| || |||| ||||||||||  |||||||||    
T  13159532 taaccgctccctaatcacacgcggcaaaacccgaaggcattta-cctcacatgcgcctatataagggtgatttagcttcaccctcaagg--tgattcact 13159436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 292
Target Start/End: Complemental strand, 5863368 - 5863251
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttca-cgagcgcctatgtaagggtgactttgcttaaccctcaaggta 273  Q
    |||||||||||||| |||||||||||| || |  |||||||||| |  |||| | || || ||||||||  ||||||||| |||||  ||||||||||||    
T  5863368 gtgtcctctaaccg-tccctaatcacatgccgtgaaacccggaggcggttatttccaacgcgcgcctatacaagggtgacattgctccaccctcaaggta 5863270  T
Q  274 tgattcacttttcacaaca 292  Q
    |||||||||||| ||||||    
T  5863269 tgattcactttttacaaca 5863251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 12265097 - 12265156
Alignment:
Q  237 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||| |||||||||  |||||| |||||||||||| |  |||||||||||||||||||    
T  12265097 gcctatataagggtgaacttgcttgaccctcaaggtacgcatcacttttcacaacacttt 12265156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 9867938 - 9867970
Alignment:
Q  264 cctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||||||||||||||||| ||||||||||    
T  9867938 cctcaaggtatgattcacttttaacaacacttt 9867970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 3404772 - 3404893
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 274  Q
    ||||||||||||| |||| ||||||||||| ||||||||| |||||  |||| |||||  |||||||| ||||||| | ||  ||| |||||||||||||    
T  3404772 gtgtcctctaaccactccttaatcacacgctgcaaaacccagagacggttattttcacacgcgcctatataagggtaatttaacttcaccctcaaggtat 3404871  T
Q  275 gattcacttttcacaacacttt 296  Q
    |||||| |||||||||||||||    
T  3404872 gattcatttttcacaacacttt 3404893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 19305585 - 19305524
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19305585 gcgcctatttaagggtgaccttgcttcaccctcaaggtatgattcacttttcacaacacttt 19305524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 176 - 296
Target Start/End: Complemental strand, 14268612 - 14268491
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacgcgcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgctt-aaccctcaaggtat 274  Q
    ||||||||||||||||||||||||||||||   ||||||||| ||  |||||||   | | |||||| |||||||||||| |||| | |||||| | |||    
T  14268612 gtgtcctctaaccgctccctaatcacacgccataaacccggaaacggttatctttgtgcgtgcctatataagggtgacttagcttcacccctcacgatat 14268513  T
Q  275 gattcacttttcacaacacttt 296  Q
    ||||||||||||| ||||||||    
T  14268512 gattcacttttcaaaacacttt 14268491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 20148434 - 20148375
Alignment:
Q  237 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||||    
T  20148434 gcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacacttt 20148375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 22184394 - 22184453
Alignment:
Q  237 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||||    
T  22184394 gcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacacttt 22184453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 15480314 - 15480372
Alignment:
Q  238 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||||    
T  15480314 cctatataagggtgacttagcttcactctcaaggtatgattcacttttcacaacacttt 15480372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 34572904 - 34573025
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacg-cgcaaaacccggagacaattatcttcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtat 274  Q
    ||||||||||| | ||||||||||||||| |||| | |  |||||  |||||  ||||  |||||||| ||||||||||||  ||| |||||||| ||||    
T  34572904 gtgtcctctaatcactccctaatcacacgtcgcatatcatggagatgattattctcacacgcgcctatataagggtgacttaacttcaccctcaatgtat 34573003  T
Q  275 gattcacttttcacaacacttt 296  Q
    |||||||||||||| |||||||    
T  34573004 gattcacttttcaccacacttt 34573025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 18147424 - 18147366
Alignment:
Q  238 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||| |||||||||| |||||| ||||| ||||||||| |||||||||||||||||||    
T  18147424 cctatataagggtgacattgcttcaccctaaaggtatgagtcacttttcacaacacttt 18147366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 296
Target Start/End: Complemental strand, 33597045 - 33596921
Alignment:
Q  173 catgtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttcac-gagcgcctatgtaagggtgactttgcttaaccctcaag 270  Q
    |||||||||||||||||| ||||||||| |||| ||| || |||| |||||||||  |||  | |||||||| |||| ||||  |||||| | |||||||    
T  33597045 catgtgtcctctaaccgc-ccctaatcatacgccgcataatccggtgacaattatgctcaaagcgcgcctatataagagtgaacttgcttcatcctcaag 33596947  T
Q  271 gtatgattcacttttcacaacacttt 296  Q
    |||||||||  |||||||||||||||    
T  33596946 gtatgattccattttcacaacacttt 33596921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 297
Target Start/End: Original strand, 689786 - 689889
Alignment:
Q  195 taatcacacgc-gcaaaacccggagacaattatcttca-cgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaaca 292  Q
    ||||||||||| ||||||| ||||||| |||||  ||| || |||||||| |||||||||| ||| | | || |||||||| ||||||||||||||||||    
T  689786 taatcacacgccgcaaaactcggagacgattatgatcaacgtgcgcctatataagggtgaccttgatcagcc-tcaaggtacgattcacttttcacaaca 689884  T
Q  293 cttta 297  Q
    |||||    
T  689885 cttta 689889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 12203617 - 12203669
Alignment:
Q  244 taagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||||||||||  ||| |||||||| ||||||||||||||||||||||||||    
T  12203617 taagggtgacttaacttcaccctcaaagtatgattcacttttcacaacacttt 12203669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 11087683 - 11087565
Alignment:
Q  176 gtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattatcttca-cgagcgcctatgtaagggtgactttgcttaaccctcaaggta 273  Q
    |||||||||||||| ||| |||| |||||| ||| || ||||||||| ||||  ||| || || ||||| |||||||||  ||| || | ||||||||||    
T  11087683 gtgtcctctaaccg-tccttaattacacgccgcataatccggagacagttatgctcaacgcgcacctatataagggtgaacttgtttcatcctcaaggta 11087585  T
Q  274 tgattcacttttcacaacac 293  Q
    ||||||||||||||||||||    
T  11087584 tgattcacttttcacaacac 11087565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 30681113 - 30681058
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaa 290  Q
    |||||||| ||| |||||| |||||| | |||||||||||||||||||||||||||    
T  30681113 gcgcctatctaaaggtgacattgcttcatcctcaaggtatgattcacttttcacaa 30681058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 9291984 - 9292041
Alignment:
Q  229 tcacgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttc 286  Q
    ||||| |||||||| ||| ||||| || |||| |||||||||||||||||||||||||    
T  9291984 tcacgtgcgcctatataaaggtgagttagcttcaccctcaaggtatgattcacttttc 9292041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 10115659 - 10115716
Alignment:
Q  239 ctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||| ||||| |||||| |||| |||||| |||||||||||||||||||||| |||||    
T  10115659 ctatataaggctgacttagcttcaccctcgaggtatgattcacttttcacaaaacttt 10115716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 16131089 - 16131028
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||| ||||||| |  ||| || |||||||||||||||||||| ||||||||||||||    
T  16131089 gcgcctatataagggtaaacttgtttcaccctcaaggtatgattcacgtttcacaacacttt 16131028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 17380217 - 17380156
Alignment:
Q  236 cgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttta 297  Q
    ||||||| |||||||||| |||| | | ||| |||||| |||||||||||||||||||||||    
T  17380217 cgcctatataagggtgaccttgcgtcaacctgaaggtaagattcacttttcacaacacttta 17380156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 4251029 - 4251073
Alignment:
Q  250 tgactttgcttaaccctcaaggtatgattcacttttcacaacact 294  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||    
T  4251029 tgactttgcttcaccctcaagatatgatttacttttcacaacact 4251073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 413
Target Start/End: Complemental strand, 14268428 - 14268357
Alignment:
Q  342 tttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatccatcc 413  Q
    |||||||| || |||||||||||| |||||| |||| |||||  | ||||| ||||||| ||||||||||||    
T  14268428 tttcgttcgaccgcaaagactcattgccaccgtaccggagtacataccgccgctgttgcttctcatccatcc 14268357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 27772537 - 27772584
Alignment:
Q  237 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttt 284  Q
    |||||| |||||||||| |||||| ||| |||||||||||||||||||    
T  27772537 gcctatataagggtgaccttgcttcaccttcaaggtatgattcacttt 27772584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 16343600 - 16343542
Alignment:
Q  314 ttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccacc 372  Q
    ||||||||||||| ||| |||||  ||| |||| |||||||| ||||||||||||||||    
T  16343600 ttggagtgctaacgtgcctgcaggcacccttcgctccactgcgaagactcatcgccacc 16343542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 31423807 - 31423868
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||| ||||||||   |||||| |||||||||  ||||||||||| ||||||||||||    
T  31423807 gcgcctatataagggtgcacttgcttcaccctcaagacatgattcacttctcacaacacttt 31423868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 9277280 - 9277320
Alignment:
Q  244 taagggtgactttgcttaaccctcaaggtatgattcacttt 284  Q
    ||||||||| || |||| |||||||||||||||||||||||    
T  9277280 taagggtgagttagcttcaccctcaaggtatgattcacttt 9277320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 19277046 - 19277106
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacactt 295  Q
    |||||||| |||||||||  |||||| ||||||||||||    ||||||||||||||||||    
T  19277046 gcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacactt 19277106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 22692210 - 22692162
Alignment:
Q  238 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttc 286  Q
    ||||| ||| |||||||| |||| ||||||||| |||||||||||||||    
T  22692210 cctatataaaggtgacttagcttcaccctcaagttatgattcacttttc 22692162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 34064316 - 34064256
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacactt 295  Q
    |||||||| |||||||||  |||||| ||||||||||||    ||||||||||||||||||    
T  34064316 gcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacactt 34064256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 173 - 296
Target Start/End: Original strand, 95717 - 95841
Alignment:
Q  173 catgtgtcctctaaccgctccctaatcacacgc-gcaaaacccggagacaattat-cttcacgagcgcctatgtaagggtgactttgcttaaccctcaag 270  Q
    ||||||||||||||||| ||||||||||||||| ||||||| |||||  |  ||| |   ||| | |||||| |||||||||| |||||| ||||| |||    
T  95717 catgtgtcctctaaccg-tccctaatcacacgccgcaaaactcggaggtagatattccaaacgcgtgcctatataagggtgacgttgcttcaccctgaag 95815  T
Q  271 gtatgattcacttttcacaacacttt 296  Q
    ||||||||||||||||||||||||||    
T  95816 gtatgattcacttttcacaacacttt 95841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 68774 - 68833
Alignment:
Q  237 gcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||| |||||||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  68774 gcctatataagggtgaccttgcttctccctcaaggtatgattcacttttcacaacacttt 68833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 15403 - 15461
Alignment:
Q  238 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||| |||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  15403 cctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacacttt 15461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 8574 - 8608
Alignment:
Q  262 accctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||| |||||||||||||||||||||||||||||    
T  8574 acccttaaggtatgattcacttttcacaacacttt 8608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 14040 - 13982
Alignment:
Q  238 cctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    ||||| |||||||||  |||||| |||||||||||||||||||||| ||||||||||||    
T  14040 cctatataagggtgatcttgcttcaccctcaaggtatgattcacttctcacaacacttt 13982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 120981 - 121043
Alignment:
Q  235 gcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttta 297  Q
    |||||||| ||||||||| ||||||| ||||||||||||    ||||||||||||||||||||    
T  120981 gcgcctatataagggtgaatttgcttcaccctcaaggtacacatcacttttcacaacacttta 121043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 6445 - 6358
Alignment:
Q  210 aacccggagacaattatcttca-cgagcgcctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||||||||  |||| |||| || |||||||| ||||| |||  |||||| || ||||||||| || |||||||||||||||||||    
T  6445 aacccggagacggttatgttcaacgtgcgcctatataaggatgaacttgcttcacgctcaaggtacgactcacttttcacaacacttt 6358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 413
Target Start/End: Complemental strand, 7881 - 7807
Alignment:
Q  339 acctttcgttccactgcaaagactcatcgccaccatacctgagtattttccgccactgttgcctctcatccatcc 413  Q
    ||||||| |||||| |  |||||||||||||||| ||   ||||| ||| ||||||| |||||||||||||||||    
T  7881 acctttccttccaccgtgaagactcatcgccaccgtaatagagtacttttcgccacttttgcctctcatccatcc 7807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 73792 - 73833
Alignment:
Q  255 ttgcttaaccctcaaggtatgattcacttttcacaacacttt 296  Q
    |||||| ||||| ||||||||||| |||||||||||||||||    
T  73792 ttgcttcaccctgaaggtatgatttacttttcacaacacttt 73833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 21592 - 21648
Alignment:
Q  239 ctatgtaagggtgactttgcttaaccctcaaggtatgattcacttttcacaacactt 295  Q
    |||||||||||||| ||||||| ||||||||||||    ||||||| ||||||||||    
T  21592 ctatgtaagggtgaatttgcttcaccctcaaggtacacatcactttccacaacactt 21648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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