View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_30 (Length: 350)
Name: NF10041_low_30
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 30963925 - 30963589
Alignment:
| Q |
1 |
agcgattattagtgtcttagactcttactatgcaatttatatgtctcagctttcaaaatcttccaccatgccgaacttgaagaagctactaaccattttg |
100 |
Q |
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| T |
30963925 |
agcgattattagtgtcttagactcttactctgcaatttatatgtctcagctttcaaaatcttccaccatgccgaacttgaagaagctactaaccattttg |
30963826 |
T |
|
| Q |
101 |
acacttttctgggatctggagggttcggcagagtctattatggtaagaagctgcaaagatatctgcaaagtttaatgagaaaatgatgattgcactcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30963825 |
acacttttctgggatctggagggttcggcagagtctattatggtaagaagctgcaaagatatctgcaaagtttaatgagaaaatgatgattgcactcttt |
30963726 |
T |
|
| Q |
201 |
aattgtagttcaataccttggtgt-----tttttacaggtatatgtttaaaacttttttacatagtaatttccgttcgttgcgatctctaaacagctgat |
295 |
Q |
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| T |
30963725 |
aactgtagttcaataccttggtgttttcctttttacaggtatatgtttaaaacttttttacatagtaatttccgttcgttgcgatctctaaacagctgat |
30963626 |
T |
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| Q |
296 |
agaaactatagataaaagaaaattatataaaagtaat |
332 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
30963625 |
agaaactatagataaaagaaaattatataaaagtaat |
30963589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 4 - 291
Target Start/End: Complemental strand, 30933545 - 30933259
Alignment:
| Q |
4 |
gattattagtgtcttagactcttactatgcaatttatatgtctcagctttcaaaatcttccaccatgccgaacttgaagaagctactaaccattttgaca |
103 |
Q |
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|||||||| ||| |||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
30933545 |
gattattaatgttttagactcttactatgtaattcatacgtctcagctttcaaaatcttccaccatgccgaacttgaagaagctactaacaagtttgaca |
30933446 |
T |
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| Q |
104 |
cttttctgggatctggagggttcggcagagtctattatggtaagaagctgcaaagatatctgcaaagtttaatgagaaaatgatgattgcactctttaat |
203 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||| |
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| T |
30933445 |
cttttttgggatctggagggttcggcagagtctactatggtaagaagctgcaaaggtatctgcaaattttaatgacaaaatgatgactgcactctttaat |
30933346 |
T |
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| Q |
204 |
tgtagttcaataccttggtgttttttacaggtatatgtttaaaacttttttacatagtaatttccgttcgttgcgatctctaaacagc |
291 |
Q |
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|||||||||||| ||| | ||||||||||| |||||||||||||||||||||| |||||||||| |||||| || |||||||||||| |
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| T |
30933345 |
tgtagttcaataatttgct-ttttttacaggcatatgtttaaaacttttttacacagtaatttccattcgttacgttctctaaacagc |
30933259 |
T |
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