View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_31 (Length: 347)
Name: NF10041_low_31
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 48142244 - 48141912
Alignment:
| Q |
1 |
tcctttgctccatacatctaagttttattggtgcaatttatttgtccgaattaacaacacattggttgaaattcaaaagtgtcacactaaaatttgtcga |
100 |
Q |
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| T |
48142244 |
tcctttgctccacacatctaagttttattggtgtgatttatttatcctaattcacaatacattggttgaaattcaaaaatgtcacgctaaaatttgtcga |
48142145 |
T |
|
| Q |
101 |
tctcatgaatttcgtttctattaataaaagatggtatgttgaaaaatataccataaaaatatgtgggataaagagtgtattcatagcatgactaatgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48142144 |
tctcatgaatttcgtttctattaataaaagatggtatgttgaaaaacattccataaaaatatgtgggataaagagtgtattcatagcatgactaatgttt |
48142045 |
T |
|
| Q |
201 |
ggaaatagattcgtggtggaagtgaattctgaccatggagggacaaattttacatgtaatggggagagtttaaatcccaaacaatacccacatggacttt |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48142044 |
ggaaatagattcgtggtggaagtgaattgtgaccatggagggacaaattttacatgtaatggggagagtttaaatcccaaacaatacccacatggacttt |
48141945 |
T |
|
| Q |
301 |
tggtcggagactataaaagtgtatgtctttctt |
333 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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| T |
48141944 |
tggtcggagactataaaagtgtgtgtctttctt |
48141912 |
T |
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