View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10041_low_32 (Length: 345)

Name: NF10041_low_32
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10041_low_32
NF10041_low_32
[»] chr2 (7 HSPs)
chr2 (181-317)||(28691294-28691430)
chr2 (181-307)||(28717507-28717633)
chr2 (197-317)||(28696179-28696299)
chr2 (192-269)||(28642139-28642216)
chr2 (192-269)||(28651000-28651077)
chr2 (181-244)||(28674891-28674954)
chr2 (197-257)||(28670734-28670794)
[»] chr8 (2 HSPs)
chr8 (31-181)||(14984207-14984352)
chr8 (31-142)||(37031460-37031570)
[»] chr4 (2 HSPs)
chr4 (4-142)||(5523959-5524096)
chr4 (192-244)||(41238512-41238564)
[»] chr7 (1 HSPs)
chr7 (31-142)||(25844709-25844819)


Alignment Details
Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 28691430 - 28691294
Alignment:
Q  181 ggaatttcaactcatgttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatgttatggtgaggaaagattattacacatgtgatccta 280  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||| |||||||||    
T  28691430 ggaatttcagctcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatgttatggtaaggaaagagtattacacacgtgatccta 28691331  T
Q  281 acatgaaagttctatatgtttctaattcaagtcttta 317  Q
    ||| ||||||| | || ||||||||||  ||||||||    
T  28691330 acaagaaagttgtttacgtttctaattatagtcttta 28691294  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 181 - 307
Target Start/End: Complemental strand, 28717633 - 28717507
Alignment:
Q  181 ggaatttcaactcatgttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatgttatggtgaggaaagattattacacatgtgatccta 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||||| ||||||| |||||||||||    
T  28717633 ggaatttcaactcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatgttagggtaaggaaagagtattacatatgtgatccta 28717534  T
Q  281 acatgaaagttctatatgtttctaatt 307  Q
    ||| ||||||| | ||| |||||||||    
T  28717533 acaagaaagttgtttatatttctaatt 28717507  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 197 - 317
Target Start/End: Complemental strand, 28696299 - 28696179
Alignment:
Q  197 ttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatgttatggtgaggaaagattattacacatgtgatcctaacatgaaagttctata 296  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||  | |||||| ||||| ||||| ||||| ||||| |||| ||||||| | ||    
T  28696299 ttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatgccaaggtgagaaaagagtattatacatgcgatcccaacaagaaagttgttta 28696200  T
Q  297 tgtttctaattcaagtcttta 317  Q
    |||||||||||  ||||||||    
T  28696199 tgtttctaattatagtcttta 28696179  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 28642216 - 28642139
Alignment:
Q  192 tcatgttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatgttatggtgaggaaagattattacac 269  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| | |||  || |||||||||||| ||||||||    
T  28642216 tcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacac 28642139  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 28651077 - 28651000
Alignment:
Q  192 tcatgttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatgttatggtgaggaaagattattacac 269  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| | |||  || |||||||||||| ||||||||    
T  28651077 tcatgttttgcatgagatgatcaaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacac 28651000  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 28674954 - 28674891
Alignment:
Q  181 ggaatttcaactcatgttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatg 244  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  28674954 ggaattccaacacatattttggatgagatgatcaaaggaacttgtagatttcaccaacaagatg 28674891  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 28670794 - 28670734
Alignment:
Q  197 ttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatgttatggtgaggaa 257  Q
    ||||||||||||||||||| ||||||||| ||||||| ||| ||||||  | |||||||||    
T  28670794 ttttggatgagatgatcaatggaacttgtagatttcaccaacaagatgccaaggtgaggaa 28670734  T

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Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 14984207 - 14984352
Alignment:
Q  31 ttgctttgctatgatcgaaatccattttctaccgttcaagaggtaacaatttcatcactaatcatatcaaattcgtaataattcaataaaaagaaatcaa 130  Q
    |||||||| | |||||||||||| |||||  |  |||||||||||||| |||||||| | ||||| ||||||||||||| || | |  ||| |||||||     
T  14984207 ttgctttgttgtgatcgaaatcc-ttttcagcacttcaagaggtaacagtttcatcattgatcatgtcaaattcgtaatgatcctaggaaaggaaatca- 14984304  T
Q  131 aatttttaattttaatttccgctgcctttaattatcatgatttcccttcag 181  Q
       ||||  ||||||||||||||||||||||||||||||||||||||||||    
T  14984305 ---ttttttttttaatttccgctgcctttaattatcatgatttcccttcag 14984352  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 37031570 - 37031460
Alignment:
Q  31 ttgctttgctatgatcgaaatccattttctaccgttcaagaggtaacaatttcatcactaatcatatcaaattcgtaataattcaataaaaagaaatcaa 130  Q
    |||||||| | |||||||||| | |||||| |  |||||||||||||||||  |||||| ||||| | ||||||||||| || |||  ||| ||||||||    
T  37031570 ttgctttgatgtgatcgaaattc-ttttctgcacttcaagaggtaacaattctatcactgatcatgttaaattcgtaatgatccaaggaaaggaaatcaa 37031472  T
Q  131 aatttttaattt 142  Q
    ||  ||||||||    
T  37031471 aaaatttaattt 37031460  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 5524096 - 5523959
Alignment:
Q  4 gtgtgaacgagtagaggcactaatattttgctttgctatgatcgaaatccattttctaccgttcaagaggtaacaatttcatcactaatcatatcaaatt 103  Q
    ||||| |||||||||| |  || ||| |||||||||| ||||| |||| | ||||||    |||||||||||||||||  |||||| ||||| |||||||    
T  5524096 gtgtggacgagtagagactttactatgttgctttgctgtgatcaaaattc-ttttctgtacttcaagaggtaacaattctatcactgatcatgtcaaatt 5523998  T
Q  104 cgtaataattcaataaaaagaaatcaaaatttttaattt 142  Q
    |||||| || ||| |||| |||||| ||| |||||||||    
T  5523997 cgtaatgatccaagaaaaggaaatcgaaaattttaattt 5523959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 41238512 - 41238564
Alignment:
Q  192 tcatgttttggatgagatgatcaaaggaacttgtcgatttcatcaaaaagatg 244  Q
    |||||||||||||||||||||||| |||| |||| |||||||| || ||||||    
T  41238512 tcatgttttggatgagatgatcaatggaatttgtagatttcatgaacaagatg 41238564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 25844819 - 25844709
Alignment:
Q  31 ttgctttgctatgatcgaaatccattttctaccgttcaagaggtaacaatttcatcactaatcatatcaaattcgtaataattcaataaaaagaaatcaa 130  Q
    |||||||| | |||||||||||| |||||||   ||| |||||||||||||  |||||| ||||| ||||||||||||| || |||  ||| || |||||    
T  25844819 ttgctttgttgtgatcgaaatcc-ttttctatacttcgagaggtaacaattctatcactgatcatgtcaaattcgtaatgatccaaggaaaggagatcaa 25844721  T
Q  131 aatttttaattt 142  Q
    ||  ||||||||    
T  25844720 aaaatttaattt 25844709  T

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