View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10041_low_33 (Length: 342)

Name: NF10041_low_33
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10041_low_33
NF10041_low_33
[»] chr1 (2 HSPs)
chr1 (18-335)||(45512982-45513299)
chr1 (134-234)||(45513524-45513624)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 45512982 - 45513299
Alignment:
Q  18 atacacttccttctttattaaatctttcactgtctggatgtagagttgacaattcactcattcctcgttatgctttccaaaacatgacatctcttatcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45512982 atacacttccttctttattaaatctttcactgtctggatgtagagttgacaattcactcattcctcgttatgctttccaaaacatgacatctcttatcta 45513081  T
Q  118 tcttgatctctcatcaaatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45513082 tcttgatctctcatcaaatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcact 45513181  T
Q  218 tctattccattatggttcagtcactttgagaaacttacccttcttgacctttcttacaatgggctttatggtcaaatacctcatgctttcacgaacttgt 317  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45513182 tctattccattatggttcggtcactttgagaaacttacccttcttgacctttcttataatgggctttatggtcaaatacctcatgctttcacgaacttgt 45513281  T
Q  318 catccctggttcatctca 335  Q
    |||||||||| |||||||    
T  45513282 catccctggtgcatctca 45513299  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 45513524 - 45513624
Alignment:
Q  134 aatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggt 233  Q
    ||||||||||||||||| ||||| | |  |||| ||||||||||||| |||||||  ||   |||||||  ||||| ||| ||||| ||||||| |||||    
T  45513524 aatgagcttcatggtccaattccaggggtttttcgaaacatgacttcaattgaataccttagcctttctaaaaatagtttaacttcaattccatcatggt 45513623  T
Q  234 t 234  Q
    |    
T  45513624 t 45513624  T

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