View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10041_low_36 (Length: 324)

Name: NF10041_low_36
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10041_low_36
NF10041_low_36
[»] chr2 (1 HSPs)
chr2 (12-308)||(155324-155620)
[»] chr6 (1 HSPs)
chr6 (184-271)||(24328780-24328867)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 155324 - 155620
Alignment:
Q  12 ttggtgttgaggtctcatcttttggtgcttctcaagcacaagacattgttcactagggagagggtgatgacagggtctactatagtgaacaaggttaagg 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  155324 ttggtgttgaggtctcatctttgggtgcttctcaagcacaagacattgttcactagggagagggtgatgacagggtctactattgtgaacaaggttaagg 155423  T
Q  112 caagggattttgcaaaaccaggtttgggaagagggataagggtggaggatttggacatttcacaagaggagatggaaatgtatgttgatcttcatccaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  155424 caagggattttgcaaaaccaggtttgggaagagggataagggtggaggatttggacatttcacaagaggagatggaaatgtatgttgatcttcatccaat 155523  T
Q  212 cacaaatacttctccatatactgttgttgaaacaatgtctcttgcaaaagctgctcttctgtttcgggagcttggactcaggcatttgctagttgtg 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  155524 cacaaatacttctccatatactgttgttgaaacaatgtctcttgcaaaagctgctcttctgtttcgggagcttggactcaggcatttgctagttgtg 155620  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 24328867 - 24328780
Alignment:
Q  184 tggaaatgtatgttgatcttcatccaatcacaaatacttctccatatactgttgttgaaacaatgtctcttgcaaaagctgctcttct 271  Q
    |||| ||||||||||||||||||||||| || ||||| || || || ||||| ||||| || ||||| ||||| ||||| ||| ||||    
T  24328867 tggatatgtatgttgatcttcatccaataactaatacatcgccgtacactgtagttgagactatgtcacttgctaaagccgctattct 24328780  T

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