View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_38 (Length: 308)
Name: NF10041_low_38
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 14542631 - 14542907
Alignment:
| Q |
18 |
tagattttaaattgtctttgtgcactataaaaccacacactcatccctcacattcctcaacctcaaacatcatcataacnnnnnnnnnnnnnnnnnnnnn |
117 |
Q |
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| T |
14542631 |
tagattttaaattgtctttgtgcactataaagccacacactcatccctcacattcctcaacctcaaacatcatcataacaaaacaaaaaaaataccaaaa |
14542730 |
T |
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| Q |
118 |
nncattttcaatagctatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttatcatgggatgta |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14542731 |
aacattttcaatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgta |
14542830 |
T |
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| Q |
218 |
attatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcagtagccatgttctt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |
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| T |
14542831 |
attatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctt |
14542907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 126 - 294
Target Start/End: Complemental strand, 14580848 - 14580680
Alignment:
| Q |
126 |
caatagctatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttatcatgggatgtaattataga |
225 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14580848 |
caatagcaatggaaggttcagtacaaattaatgtacttgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattataga |
14580749 |
T |
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| Q |
226 |
aaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcagtagccatgttctt |
294 |
Q |
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| T |
14580748 |
aaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctt |
14580680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 14580952 - 14580887
Alignment:
| Q |
26 |
aaattgtctttgtgcactataaaaccacacactcatccctcaca--ttcctcaacctcaaacatca |
89 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
14580952 |
aaattgtccttgtgcactataaaaccacacactcatccctcacaatatcttcaacctcaaacatca |
14580887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 127 - 294
Target Start/End: Complemental strand, 35623177 - 35623010
Alignment:
| Q |
127 |
aatagctatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttatcatgggatgtaattatagaa |
226 |
Q |
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|||||| ||||||||| | || |||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |
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| T |
35623177 |
aatagcaatggaaggtccggtgcaaattgatgtacctgaatctcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatcatagaa |
35623078 |
T |
|
| Q |
227 |
aaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcagtagccatgttctt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
35623077 |
aaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctt |
35623010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 34263991 - 34263903
Alignment:
| Q |
206 |
tcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcagtagccatgttctt |
294 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | || |||||||| |
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| T |
34263991 |
tcatgggatgaaataatagaaaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctt |
34263903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 37599764 - 37599855
Alignment:
| Q |
203 |
ttatcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcagtagccatgttctt |
294 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||| || |||||||| || |||||||||||||||||| | || |||||||| |
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| T |
37599764 |
ttatcatgggatgaaattatagaaatttttttatcaaattttggttgaatggatttatttcaagctgttcttgtagcaattgctatgttctt |
37599855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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