View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10041_low_39 (Length: 304)

Name: NF10041_low_39
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10041_low_39
NF10041_low_39
[»] chr4 (22 HSPs)
chr4 (3-299)||(29192466-29192762)
chr4 (1-299)||(50693903-50694201)
chr4 (1-299)||(17469273-17469571)
chr4 (1-299)||(36950976-36951274)
chr4 (47-299)||(34994501-34994753)
chr4 (9-293)||(8110699-8110983)
chr4 (16-300)||(17838698-17838982)
chr4 (9-299)||(4303359-4303649)
chr4 (9-299)||(12915566-12915856)
chr4 (9-299)||(15705717-15706007)
chr4 (9-208)||(22340445-22340644)
chr4 (9-300)||(29123596-29123886)
chr4 (10-206)||(18116540-18116736)
chr4 (15-299)||(6614197-6614481)
chr4 (10-206)||(23158308-23158504)
chr4 (10-206)||(36279361-36279557)
chr4 (219-293)||(3621350-3621424)
chr4 (183-249)||(12290617-12290683)
chr4 (163-300)||(25135052-25135190)
chr4 (12-66)||(51872693-51872747)
chr4 (9-78)||(3621498-3621567)
chr4 (259-300)||(22340353-22340394)
[»] chr3 (16 HSPs)
chr3 (1-299)||(39632981-39633279)
chr3 (3-296)||(10753841-10754134)
chr3 (3-299)||(16663751-16664047)
chr3 (1-299)||(52196062-52196359)
chr3 (9-300)||(48547328-48547619)
chr3 (70-299)||(30737263-30737492)
chr3 (15-300)||(42462494-42462779)
chr3 (9-299)||(23603038-23603328)
chr3 (40-299)||(42459480-42459738)
chr3 (10-299)||(53152243-53152532)
chr3 (183-299)||(32945666-32945782)
chr3 (9-80)||(8595251-8595322)
chr3 (10-299)||(23571779-23572068)
chr3 (10-65)||(3514693-3514748)
chr3 (10-65)||(17153965-17154020)
chr3 (257-293)||(8542286-8542322)
[»] chr5 (10 HSPs)
chr5 (1-299)||(38931544-38931842)
chr5 (2-299)||(8895159-8895456)
chr5 (1-299)||(29322568-29322866)
chr5 (9-299)||(31962829-31963119)
chr5 (9-300)||(11265799-11266090)
chr5 (9-300)||(27891472-27891763)
chr5 (183-299)||(6678907-6679023)
chr5 (220-299)||(29150080-29150159)
chr5 (10-299)||(5825127-5825416)
chr5 (14-299)||(10462299-10462584)
[»] chr2 (11 HSPs)
chr2 (3-298)||(1258236-1258532)
chr2 (1-299)||(33936937-33937222)
chr2 (75-299)||(22298687-22298911)
chr2 (10-300)||(38938246-38938536)
chr2 (10-299)||(27914759-27915048)
chr2 (183-299)||(21963183-21963299)
chr2 (112-298)||(23384619-23384805)
chr2 (10-66)||(30275897-30275953)
chr2 (10-66)||(32349882-32349938)
chr2 (163-245)||(32349703-32349785)
chr2 (10-63)||(21963419-21963472)
[»] chr6 (6 HSPs)
chr6 (3-299)||(5391668-5391964)
chr6 (9-293)||(28605044-28605328)
chr6 (11-298)||(9759662-9759949)
chr6 (165-299)||(17227703-17227837)
chr6 (118-290)||(667047-667219)
chr6 (10-66)||(18295554-18295610)
[»] chr7 (13 HSPs)
chr7 (1-299)||(47553064-47553362)
chr7 (3-298)||(45649312-45649607)
chr7 (9-299)||(22865905-22866195)
chr7 (9-299)||(27868685-27868965)
chr7 (9-299)||(40891921-40892211)
chr7 (10-299)||(9403283-9403572)
chr7 (9-293)||(20705649-20705933)
chr7 (9-293)||(20873693-20873977)
chr7 (183-299)||(37075921-37076037)
chr7 (49-291)||(27278385-27278627)
chr7 (10-66)||(586792-586848)
chr7 (10-65)||(37075748-37075803)
chr7 (10-66)||(12121594-12121650)
[»] chr8 (4 HSPs)
chr8 (1-299)||(10801829-10802128)
chr8 (9-299)||(26390399-26390688)
chr8 (118-300)||(31423481-31423663)
chr8 (9-104)||(29532327-29532422)
[»] chr1 (6 HSPs)
chr1 (112-299)||(37666128-37666315)
chr1 (1-117)||(37668810-37668926)
chr1 (11-300)||(5557041-5557330)
chr1 (9-299)||(49369542-49369832)
chr1 (10-299)||(41342966-41343255)
chr1 (21-296)||(28521006-28521281)
[»] scaffold0032 (1 HSPs)
scaffold0032 (9-299)||(58553-58843)
[»] scaffold0041 (1 HSPs)
scaffold0041 (9-299)||(74073-74363)
[»] scaffold0003 (1 HSPs)
scaffold0003 (184-299)||(225056-225171)
[»] scaffold0289 (1 HSPs)
scaffold0289 (138-206)||(10933-11001)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 3 - 299
Target Start/End: Original strand, 29192466 - 29192762
Alignment:
Q  3 gacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgtt 102  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29192466 gacttcgtgtggtaaggaagaggaaagggaccatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttggtattgtt 29192565  T
Q  103 acaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggattt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||||||    
T  29192566 acaactttgaatggtaatttacattcacatgcttctcaattttgtgctcttgggggtttttcaaaaaactctatgacaggttttactattatttggattt 29192665  T
Q  203 cggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  29192666 cggttttattcgtcatttagaaagatagaaacaggagaatttttcagcatcattttgattatcttgaagctctacttgaaagggttaaactccaaac 29192762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 50693903 - 50694201
Alignment:
Q  1 gcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattg 100  Q
    ||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| || |||||||||||| ||| |||||    
T  50693903 gcgactttgtgtggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgggcgactttggcttttaatttctcagtggtttggtattg 50694002  T
Q  101 ttacaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggat 200  Q
    ||||||||||||||||||||||| | || |||||| ||||||||||| ||||||| | ||| |||||||| | ||||||| |||||||  ||||||||||    
T  50694003 ttacaactttgaatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtgtaggacatgttttacagttatttggat 50694102  T
Q  201 ttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  50694103 ttcggttttattcgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagttcttcttgaaagggttaaacttcaaac 50694201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 17469273 - 17469571
Alignment:
Q  1 gcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattg 100  Q
    ||||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||  ||||||||||||||| |||||    
T  17469273 gcgactttgtttggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgggcgactttggcttttattttctcagtggcttggtattg 17469372  T
Q  101 ttacaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggat 200  Q
    |||||||| |||||||||||||| | || |||||| ||||||||||| ||||||| | ||| |||||||| ||||||||||||||||   ||||||| ||    
T  17469373 ttacaactctgaatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggttttatagttatttgaat 17469472  T
Q  201 ttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    ||| | || |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  17469473 ttcagctttattcgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaacttcaaac 17469571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 36951274 - 36950976
Alignment:
Q  1 gcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattg 100  Q
    ||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| || |||||||||||||||| | |||    
T  36951274 gcgactttgtgtggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgggcgactttggcttttaatttctcagtggcttggttttg 36951175  T
Q  101 ttacaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggat 200  Q
    |||||||| |||||||||||||| | || |||||| ||||||||||| ||||||| | ||| |||||||| ||||||||||| |||||  |||| |||||    
T  36951174 ttacaactctgaatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaaatctaggacaggatttacagttatctggat 36951075  T
Q  201 ttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
     || |||| |||| |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  36951074 gtctgttttattcgtcatttggaaagatcgaaacagaagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaacttcaaac 36950976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 47 - 299
Target Start/End: Complemental strand, 34994753 - 34994501
Alignment:
Q  47 attgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactttgaatggtaatttacattcacatgcttctcaattttg 146  Q
    |||||||||||||||| || |||||||| || |||||||||||||||| ||| |||||||||||||||||||||||| | || |||||| ||||||||||    
T  34994753 attgtgatcattatgggcgtctttggcttttaatttctcagtggcttggtatagttacaactttgaatggtaatttatactctcatgctactcaattttg 34994654  T
Q  147 tcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttcattcatcatttggaaagatagaaacaggagaattttt 246  Q
    | ||||||| | ||| |||||||| ||||||||||| |||||  |||| |||||||| |||| |||| ||||||||||||||||||||||||||||||||    
T  34994653 tgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggatttctgttttattcgtcatttggaaagatagaaacaggagaattttt 34994554  T
Q  247 cagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    ||| |||||| |||||||||||||||||| ||||||||| ||||||| |||||    
T  34994553 cagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaac 34994501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 8110983 - 8110699
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| ||||||||||| ||| | |||||||| |||||||||||||||||| | ||||||||||| ||  | ||| ||| ||||||||         
T  8110983 gtgtggtaaggaggaggaaagggaccatttcttttttcaatgtgatcattatggtcgattatggctcttgatatcgaattggtttggtattgttaaggtg 8110884  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  |||| ||| ||  ||||||||||  ||| |||||| ||||||| |  || ||||| ||||||||||||| |||||||||||| ||||||||||| |    
T  8110883 tttcatggcaatatattttcacatgctaatcagttttgtgctcttggagggttctcaaagaattctaggacagcttttactattatatggatttcggtct 8110784  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaact 293  Q
     |||  | |||||||| ||  | |||||||| ||||||||| | ||  |||| ||||| ||||||||  ||||||||||||||||    
T  8110783 tatttgttatttggaaggaccgcaacaggaggatttttcagaaccaagttgaacatctcgaagctctttttgaaagggttaaact 8110699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 17838698 - 17838982
Alignment:
Q  16 aaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactttgaatg 115  Q
    ||||| ||| ||||||||||| |||||||||| |||||| ||||||||||| | ||||||||||| ||  | || |||| | |||||||    ||  |||    
T  17838698 aaggaggagaaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattgacttggttttgttacggtgtttcatg 17838797  T
Q  116 gtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttcattcat 215  Q
    | |||||| || ||||||||  ||| |||||| |||||||||  |||||||| ||||| | || || |||  ||||||||||||||| ||||| |||  |    
T  17838798 gcaatttatatacacatgctaatcagttttgtgctcttgggggcttttcaaagaattccatgaaagctttgtctattatttggattttggttttatttgt 17838897  T
Q  216 catttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaact 300  Q
     |||||||||||| | |||| ||  ||||| ||  | ||  | ||||||||||||||||| ||||||||||||||||| ||||||    
T  17838898 tatttggaaagatcgcaacatgaagattttccaaaaccatatggatcatcttgaagctcttcttgaaagggttaaacttcaaact 17838982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 4303359 - 4303649
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| ||||||||||| ||| |||||||||| |||||| ||||||||||| | || |||||||| ||  | ||||||| | |||||||        
T  4303359 gtgtggtaaggaggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatgactcttgatatcgaattggcttggttttgttacggtg 4303458  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  |||| |||||| || | ||||||  |||||||||| | ||||| | ||||||||| | ||||| || || |||  ||||| ||||||||||| |||    
T  4303459 tttcatggcaatttatatacccatgctaatcaattttgtgcccttggaggtttttcaaagagttctacgaaagctttgtctattgtttggatttcgattt 4303558  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
     |||  | |||||||||||| | || | ||  ||||| ||  | ||  | | ||||||||||||||| ||||||||||||||||| |||||    
T  4303559 tatttgttatttggaaagatcgcaatatgaagattttccaaaaccatatgggtcatcttgaagctcttcttgaaagggttaaacttcaaac 4303649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 12915856 - 12915566
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| |||||||| ||  || | |||||||| ||||| |||||||| ||  | ||||||||| | || |||||||||| |||||||||   |    
T  12915856 gtgtggtaaggaggaggaaagagacaatttattttttcaatgtgaccattatgggcggttatggctcttggtatcgcagtggcttggtattgttacggtt 12915757  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  |||||||||||||| | ||||||  ||| |||||| |||| || |  || ||||  |  |||| |  ||  ||||||||||||| ||||||||| |    
T  12915756 ttacatggtaatttacatactcatgctaatcatttttgtgctctcggtggcttctcaaggaggtctacgttagcgtttactattatttagatttcggtct 12915657  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
     ||   | || ||||||||| | |||||||||||||| ||  |||||||||||||||| ||||||||  | |||||||||||||| |||||    
T  12915656 tatatgttatatggaaagatcgcaacaggagaattttccaaaatcactttgatcatctagaagctcttatggaaagggttaaacttcaaac 12915566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 15705717 - 15706007
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    ||||| |||||| ||||||||||||||| |||||||||| |||||| ||||||||||| | ||||||||||| ||  | || |||| | |||||||        
T  15705717 gtgtgataaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattgacttggttttgttacggtg 15705816  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
     |  |||| |||||| || | ||||||   ||||||||| | ||||| | ||||||||| | ||||| || || |||  ||||| |||||||||||||||    
T  15705817 cttcatggcaatttatatacccatgctaaccaattttgtgcccttggagatttttcaaagagttctacgaaagctttatctattgtttggatttcggttt 15705916  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
     ||| || |||||||||||| | || | ||  ||||| ||  | ||  | | ||||||||||||||| ||||||||||||||||| |||||    
T  15705917 tatttattatttggaaagatcgcaatatgaagattttccaaaaccatatgggtcatcttgaagctcttcttgaaagggttaaacttcaaac 15706007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 22340644 - 22340445
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| |||||||| |||||| |||||||||| |||||| ||||||||||| | ||||||||| ||||  | ||| ||| | |||||||        
T  22340644 gtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggctcttggtttcgaattggtttggttttgttacggtg 22340545  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  |||| |||||| || | ||||||  ||| |||||| ||||||| | ||||||||| ||||||| || || |||  ||||||||||||||| |||||    
T  22340544 tttcatggcaatttatatcctcatgctaatcagttttgtgctcttggaggtttttcaaagaattctatgaaagctttgtctattatttggattttggttt 22340445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 29123596 - 29123886
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| |||||||| || ||| |||||||||| ||||||  |||||||||| | ||||||||| ||||  | ||||||| | |||||||        
T  29123596 gtgtggtaaggaggaggaaagagaccatttgttttttcaatgtgatttttatggtcgattatggctcttggtttcgaattggcttggttttgttacggtg 29123695  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  | || |||||| || | ||||||  ||| |||||| ||||||| |  |||||||| ||||||| || || |||  |||||||||||||||||||||    
T  29123696 tttcaaggcaatttatatcctcatgctaatcagttttgtgctcttggag-gttttcaaagaattctatgaaagctttgtctattatttggatttcggttt 29123794  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaact 300  Q
     |||  | |||||||||||| | ||   ||| ||||| ||  |  |  | ||||||||||||||||| ||||||| ||||||||| ||||||    
T  29123795 tatttgttatttggaaagatcgcaatttgaggattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaacttcaaact 29123886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 18116540 - 18116736
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactt 109  Q
    ||||||||||| ||||||||||||||| ||||||| || |||||| ||||||||||  | ||||| ||| | ||  | ||||||| | |||||||   ||    
T  18116540 tgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttttgctatcggattggcttggttttgttacggttt 18116639  T
Q  110 tgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggt 206  Q
    | ||||| |||||| || || |||||  ||| |||||  ||||||| |  || ||||| ||||||| || ||  |||||||||||||||||||||||    
T  18116640 ttaatggcaatttatatacaaatgctaatcagttttgcgctcttggaggcttctcaaagaattctatgaaagcatttactattatttggatttcggt 18116736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 6614197 - 6614481
Alignment:
Q  15 taaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactttgaat 114  Q
    |||||| ||||||||||||||| ||||||| || |||||| ||||||||||  | |||||  || | ||  | ||| | | | |||||||   | | |||    
T  6614197 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 6614296  T
Q  115 ggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttcattca 214  Q
    || |||||| ||||||||||   ||| |||||| ||||||| | ||| ||||| ||||||  || ||  ||| ||||||||||||||||||| | ||| |    
T  6614297 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 6614396  T
Q  215 tcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
      || ||||||||| | |||| ||| ||||||||  | ||  ||| |||| | |||| ||| ||||||||||| |||||||||||    
T  6614397 ctatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaac 6614481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 23158308 - 23158504
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactt 109  Q
    ||||||||||| ||||||||||||||| ||||||| || | |||| ||||||||||| | |||||  || | ||  | ||| | | | |||||||   |     
T  23158308 tgtggtaaggaggaggaaagggatcatttgtttttccaatatgattattatggtcgattatggcttatgctatcggattggttaggttttgttacggttc 23158407  T
Q  110 tgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggt 206  Q
    | ||||| |||||| || | ||||||  ||| |||||  ||||||| | ||| ||||| ||||||| || || ||||||||||||||||||||||||    
T  23158408 tcaatggcaatttatatactcatgctaatcagttttgcgctcttggaggtttctcaaagaattctatgaaagcttttactattatttggatttcggt 23158504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 36279361 - 36279557
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactt 109  Q
    ||||||||||| ||| ||||||||||| ||||||| || |||| | ||||||||||| | |||||  || | ||  | ||| | | | |||||||   ||    
T  36279361 tgtggtaaggaggagaaaagggatcatttgtttttccaatgtgcttattatggtcgattatggcttatgctatcggattggttaggttttgttacggttt 36279460  T
Q  110 tgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggt 206  Q
    | ||||| |||||| || | ||||||  ||| |||||  ||||||| | ||| ||||| |||| || || || ||||||||||||||||||||||||    
T  36279461 tcaatggcaatttatatactcatgctaatcagttttgcgctcttggaggtttctcaaagaattatatgaaagcttttactattatttggatttcggt 36279557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 3621424 - 3621350
Alignment:
Q  219 ttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaact 293  Q
    |||||||||| | |||||||| ||||||||| | ||   ||| ||||||||||||||  ||||||||||||||||    
T  3621424 ttggaaagatcgtaacaggaggatttttcagaaccaaaatgaacatcttgaagctctttttgaaagggttaaact 3621350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 12290683 - 12290617
Alignment:
Q  183 ttttactattatttggatttcggtttcattcatcatttggaaagatagaaacaggagaatttttcag 249  Q
    |||||||||||||||||||||||| | |||  | |||||||||||| |||| || || |||||||||    
T  12290683 ttttactattatttggatttcggtcttatttgttatttggaaagatcgaaatagaaggatttttcag 12290617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 300
Target Start/End: Complemental strand, 25135190 - 25135052
Alignment:
Q  163 tcaaaaaattctaggacaggtttt-actattatttggatttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgat 261  Q
    ||||||||||| ||||||  |||| ||||||||||||||||| || | |||  | |||||||||||| | ||||| ||| |||||||  || |||| |||    
T  25135190 tcaaaaaattcaaggacaacttttcactattatttggatttcagtcttatttgttatttggaaagatcgtaacagtagagtttttcataatgacttggat 25135091  T
Q  262 catcttgaagctctacttgaaagggttaaactccaaact 300  Q
    || |||| ||  || || |||| |||||||| |||||||    
T  25135090 cagcttgcagggcttctcgaaaaggttaaacaccaaact 25135052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 51872747 - 51872693
Alignment:
Q  12 tggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcga 66  Q
    ||||||||| ||||||||||||||| ||||||| || || ||| |||||||||||    
T  51872747 tggtaaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcga 51872693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 3621567 - 3621498
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttg 78  Q
    |||||||||||| |||||||| || ||| | ||||| || |||||||||||||||||  | |||||||||    
T  3621567 gtgtggtaaggaggaggaaagagaccatttttttttccaatgtgatcattatggtcggttatggctcttg 3621498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 22340394 - 22340353
Alignment:
Q  259 gatcatcttgaagctctacttgaaagggttaaactccaaact 300  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||    
T  22340394 gatcatcttgaagctcttcttgaaaaggttaaacttcaaact 22340353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 39632981 - 39633279
Alignment:
Q  1 gcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||    
T  39632981 gcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgaccattatggtcgactttggctcttgatttctcattggcttggtattg 39633080  T
Q  101 ttacaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggat 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  39633081 ttacaactttgaatggtaatttacattcacatgcttcttaattttgtgctcttgggggtttttcgaaaaactctaggacaggttttactattatttggat 39633180  T
Q  201 ttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    |||  ||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39633181 ttcaattttattcgtcatttggaaagatagaaacagcagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 39633279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 3 - 296
Target Start/End: Complemental strand, 10754134 - 10753841
Alignment:
Q  3 gacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgtt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| ||||||||||   |||||    
T  10754134 gacttcgtgtggtaaggaagaggaaagggatcatctgttttttctttgtgatcattatggtcgtctttggcttttgatttcacagtggcttggatttgtt 10754035  T
Q  103 acaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggattt 202  Q
    || |||||||||||||||||||||||||||||||| ||||||||  ||||||| | |||||| ||||| |||  ||||||||||||||||||||||||||    
T  10754034 accactttgaatggtaatttacattcacatgcttcccaattttgcgctcttggaggtttttcgaaaaaatctgtgacaggttttactattatttggattt 10753935  T
Q  203 cggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactcca 296  Q
    |||||| |||  |||| ||||| ||||||||||| |||||||||||||| || |||||||| ||||||| ||| ||||||||||||||||||||    
T  10753934 cggttttatttgtcatatggaaggatagaaacagaagaatttttcagcaacaatttgatcagcttgaagttcttcttgaaagggttaaactcca 10753841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 3 - 299
Target Start/End: Complemental strand, 16664047 - 16663751
Alignment:
Q  3 gacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgtt 102  Q
    ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| || |||||||||||||||| |||||||    
T  16664047 gactttgtgtggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgggcgactttggcttttaatttctcagtggcttgttattgtt 16663948  T
Q  103 acaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggattt 202  Q
    |||||| |||||||||||||| | || |||||| ||||||||||| ||||||| | ||| |||||||  |||||||||||||||||  |||| |||||||    
T  16663947 acaactctgaatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaatgtctaggacaggttttacagttatctggattt 16663848  T
Q  203 cggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    | |||| |||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||| |||||    
T  16663847 cagttttattcgtcatttggaaagatagaaacagaagaatttttcagaatcaatttgatcatcttgaagctcttcttgaaaggattaaacttcaaac 16663751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 52196359 - 52196062
Alignment:
Q  1 gcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattg 100  Q
    ||||||| |||||||||||||||||||||| ||||  |||||||| ||||||| |||||||| |||||||| || || ||||||||||||||||||||||    
T  52196359 gcgactttgtgtggtaaggaagaggaaagg-atcacttgttttttaattgtgaacattatgggcgactttgacttttaatttctcagtggcttgatattg 52196261  T
Q  101 ttacaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggat 200  Q
    |||||||| |||||||||||||| | || |||||| ||||||||||| ||||||| | ||| |||||||| ||||||||||| |||||  |||| |||||    
T  52196260 ttacaactctgaatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatctggat 52196161  T
Q  201 ttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    ||| |||| |||| |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||||| ||||||| |||||    
T  52196160 ttctgttttattcgtcatttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaac 52196062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 48547619 - 48547328
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||| | ||||||||||| ||  | ||| ||| |||||||||        
T  48547619 gtgtggtaaggaggaggaaagggaccatttgttttttcaatgtgatcattatggtcgattatggctcttgatatcgaattggtttggtattgttacggtg 48547520  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    |   | || ||||||  ||||||||||  ||| |||||| ||||||| | ||| ||||| || |||||||||  |||||||||||| ||||||||||| |    
T  48547519 tctcaaggcaatttaatttcacatgctaatcagttttgtgctcttggaggtttctcaaagaagtctaggacaacttttactattatatggatttcggtct 48547420  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaact 300  Q
     |||  | |||||||||||| | |||||||| ||||||||| | ||  |||| ||||| ||||||||  |||||||||||||||| ||||||    
T  48547419 tatttgttatttggaaagatcgcaacaggaggatttttcagaaccaaattgaacatctcgaagctctttttgaaagggttaaacttcaaact 48547328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 299
Target Start/End: Complemental strand, 30737492 - 30737263
Alignment:
Q  70 tggctcttgatttctcagtggcttgatattgttacaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaa 169  Q
    ||||||||||| || || ||||||  ||||||||| | |||  ||||  |||||||| |||||||   ||| |||||| ||||||| | ||| ||||| |    
T  30737492 tggctcttgatctcgcattggcttagtattgttacgattttacatggcgatttacatacacatgcgaatcagttttgtactcttggaggtttctcaaaga 30737393  T
Q  170 attctaggacaggttttactattatttggatttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttga 269  Q
    | |||||||||  |||||||||||| ||||||||||| | |||  | || || |||||| | || ||||||||||| ||  ||||| |||||||||||||    
T  30737392 actctaggacaacttttactattatatggatttcggtcttatttgttatatgaaaagatcgcaagaggagaattttccaaaatcacattgatcatcttga 30737293  T
Q  270 agctctacttgaaagggttaaactccaaac 299  Q
    |||||| ||||||||||||||||| |||||    
T  30737292 agctcttcttgaaagggttaaacttcaaac 30737263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 15 - 300
Target Start/End: Complemental strand, 42462779 - 42462494
Alignment:
Q  15 taaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactttgaat 114  Q
    |||||| |||||||| |||||| |||||||||| |||||| ||||||||||  | ||||| ||||| ||  | || |||| | ||||||| |  ||  ||    
T  42462779 taaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcggttatggcttttgatatcaaattgacttggttttgttacgatgtttcat 42462680  T
Q  115 ggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttcattca 214  Q
    || |||||| || ||||||||  ||| |||||| ||||||| |  |||||||| |||| || || ||||||||||||||||||||||||||| | |||      
T  42462679 ggcaatttatatacacatgctaatcagttttgtgctcttggaggcttttcaaagaattatatgaaaggttttactattatttggatttcggtcttatttg 42462580  T
Q  215 tcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaact 300  Q
    | ||||| |||||| | |||| ||| ||||| ||  | ||     |||||||||||||||| ||||||||||||||||| ||||||    
T  42462579 ttatttgaaaagatcgcaacatgaggattttccaaaaccatacgaatcatcttgaagctcttcttgaaagggttaaacttcaaact 42462494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 23603328 - 23603038
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||||  |||||||||||| ||||||||| ||||  | ||||||| | |||||||        
T  23603328 gtgtggtaaggaggaggaaagagatcatctgttttttcaatgtgatttttatggtcgactatggctcttggtttcgaattggcttggttttgttacggtg 23603229  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  |||| |||||| || | ||||||  ||| |||||| ||||||| |  |||||||| ||||||| || || | |  ||||||||||||||||| |||    
T  23603228 tttcatggcaatttatatcctcatgctattcagttttgtgctcttggaggattttcaaagaattctatgaaagctctgtctattatttggatttcgattt 23603129  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
     |||  | |||||||||||| | |||  ||  ||||| ||  |  |  | ||||||||||||||||| ||||||| ||||||||| |||||    
T  23603128 tatttgttatttggaaagatcgcaacttgaagattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaacttcaaac 23603038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 299
Target Start/End: Original strand, 42459480 - 42459738
Alignment:
Q  40 ttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactttgaatggtaatttacattcacatgcttctc 139  Q
    |||||||| ||||| |||||||| ||  | ||||||||| | || |||||||||| |||||||||   |||  |||||||||||||||| ||||||  ||    
T  42459480 ttttttcaatgtgaccattatggacggttatggctcttggtatcgcagtggcttggtattgttacggttttacatggtaatttacattctcatgctaatc 42459579  T
Q  140 aattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttcattcatcatttggaaagatagaaacaggag 239  Q
    | |||||| |||| || |  || ||||  | || || |  ||  ||||||||||||||||||||||| | ||   | || ||||||||| | ||||||||    
T  42459580 agttttgtgctctcggtggcttctcaaggagttatatgttagcgtttactattatttggatttcggtcttatatgttatatggaaagatcgcaacaggag 42459679  T
Q  240 aatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    |||||| ||  |||| ||||||||||||||||||||  | | |||||||||||| |||||    
T  42459680 aatttt-caaaatcattttgatcatcttgaagctcttatggtaagggttaaacttcaaac 42459738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 53152243 - 53152532
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactt 109  Q
    ||||| ||||| |||||||| |||||| |||||||||| |||||| ||||||||||  | |||||  || | ||  | ||| | | |||||||||   |     
T  53152243 tgtggcaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcggttatggcttatgctatcggattggttaggtattgttacggttc 53152342  T
Q  110 tgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttc 209  Q
    | ||||  |||||| |||||||||||  ||| |||||| | ||||| |  || |||||  |||||  |  || |||| ||||||||||||||||||| |     
T  53152343 tcaatgacaatttatattcacatgctaatcagttttgtgcacttggaggattctcaaagcattctgtgcaagctttttctattatttggatttcggtctt 53152442  T
Q  210 attcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    ||| |  |||||||||||| | |||||||| ||||||||  | ||  ||| |||||| |||| ||| |||||||||||||||||||||||    
T  53152443 atttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggttaaactccaaac 53152532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 32945782 - 32945666
Alignment:
Q  183 ttttactattatttggatttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaa 282  Q
    |||| ||||||||||||||||||| | ||| |  |||||||||||| | |||||||| ||||||||  | ||  ||| |||||| |||| ||| ||||||    
T  32945782 tttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaa 32945683  T
Q  283 agggttaaactccaaac 299  Q
    ||||| |||||||||||    
T  32945682 agggtcaaactccaaac 32945666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 8595322 - 8595251
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgat 80  Q
    ||||| |||||| ||||||||||| ||| |||||||||| |||||| ||||||||||  | |||||||||||    
T  8595322 gtgtgctaaggaggaggaaagggaccatttgttttttcaatgtgattattatggtcgtttatggctcttgat 8595251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 23571779 - 23572068
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactt 109  Q
    ||||||||||| ||||||||||||||| ||||||| || || ||| ||||||||||  | ||||| ||| | ||  | ||| | | | ||| |||   ||    
T  23571779 tgtggtaaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcggttatggcttttgctatcggattggttaggttttgctacggttt 23571878  T
Q  110 tgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttc 209  Q
    | ||||| |||||| || ||||||||  ||| |||||| || |||| |  || ||||| ||||||| || ||  ||||||||||||||||||||||| |     
T  23571879 ttaatggcaatttatatacacatgctaatcagttttgtgcttttggaggcttctcaaagaattctatgaaagcatttactattatttggatttcggtatt 23571978  T
Q  210 attcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    |||    || ||||||||| | |||||||| ||||| ||  | ||  ||| |||| | |||| |||| |||||||||| ||||| |||||    
T  23571979 attttctatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttctaattgaaagggtcaaacttcaaac 23572068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 3514748 - 3514693
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcg 65  Q
    ||||||||||| ||||||||||||||| ||||||| || || ||| ||||||||||    
T  3514748 tgtggtaaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcg 3514693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 17153965 - 17154020
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcg 65  Q
    |||||||| || ||||||||||||||| ||||||| || |||||| ||||||||||    
T  17153965 tgtggtaaagaggaggaaagggatcatttgtttttccaatgtgattattatggtcg 17154020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 8542322 - 8542286
Alignment:
Q  257 ttgatcatcttgaagctctacttgaaagggttaaact 293  Q
    |||||||||| |||||||| |||||||||||||||||    
T  8542322 ttgatcatctggaagctcttcttgaaagggttaaact 8542286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 38931842 - 38931544
Alignment:
Q  1 gcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattg 100  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  38931842 gcgactttgtgtggtaaggaagaggaaagggatcgtctgttttttaattgtgatcattatgggcgactttggcttttgatttctcagtggcttggtattg 38931743  T
Q  101 ttacaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggat 200  Q
    ||||||||||||||||||| |||   || |||||| | ||||||||| ||||||| | ||| |||||||| |||||||||||||||||  ||||||||||    
T  38931742 ttacaactttgaatggtaacttatgctctcatgctacccaattttgtgctcttggaggtttctcaaaaaactctaggacaggttttacagttatttggat 38931643  T
Q  201 ttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  38931642 ttcggttttattcatcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctcttcttgaaagggttaaacttcaaac 38931544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 299
Target Start/End: Complemental strand, 8895456 - 8895159
Alignment:
Q  2 cgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgt 101  Q
    |||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  8895456 cgactttgtgtggtaaggaagaggaaagggatcatatgttttttaattgtgatcattatgggcgactttggcttttgatttctcagtggcttggtattgt 8895357  T
Q  102 tacaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatt 201  Q
    ||||| |||||||||||| ||| | || |||||| | ||||||||| ||||||| | ||| ||||||||||||||||||||||||||  |||||||||||    
T  8895356 tacaaatttgaatggtaacttatactctcatgctacccaattttgtgctcttggaggtttctcaaaaaattctaggacaggttttacagttatttggatt 8895257  T
Q  202 tcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    || |||| |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||| |||||    
T  8895256 tcagttttattcgtcatttggaaagatagaaacaggagaatttttcagaatcacttagatcatcttaaagctcttcttgaaagggttaaacttcaaac 8895159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 29322866 - 29322568
Alignment:
Q  1 gcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattg 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||||||| || |||||||||||||||| |||||    
T  29322866 gcgactttgtgtggtaaggaagaggaaagggatcatctgttttttacttgtgatcattatgagcgactttggcttttaatttctcagtggcttggtattg 29322767  T
Q  101 ttacaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggat 200  Q
     ||||||| |||||||||||||| | || ||| || ||||||||||| ||||||| | ||| || ||||| ||||||||||||||||| ||||| |||||    
T  29322766 ctacaactctgaatggtaatttatactctcattctactcaattttgtgctcttggaggtttctctaaaaagtctaggacaggttttacaattatctggat 29322667  T
Q  201 ttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    ||  |||| || | ||||||||||||||||||||| ||||||||||||| |||| | |||||||||||||||||| ||||||||| ||||||| |||||    
T  29322666 tttagttttatgcgtcatttggaaagatagaaacaagagaatttttcagaatcattctgatcatcttgaagctcttcttgaaaggattaaacttcaaac 29322568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 31962829 - 31963119
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||||||| ||||| || |||||||||| ||||||||| | |    
T  31962829 gtgtggtaaggaagaggatagggaccatttgttttttcattgtgatcattatggacggctttggcttttgatctcacagtggcttggtattgttacgatt 31962928  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
     |  |||||||||||||||| ||||||  ||||||||||  |||||| | ||| ||||| || ||||||||||||||||||||||||| |||||||||      
T  31962929 ctacatggtaatttacattctcatgctaatcaattttgtggtcttggaggtttctcaaagaactctaggacaggttttactattatttcgatttcggtac 31963028  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
     |||  |||||||||||||  |||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |||||||    
T  31963029 tatttgtcatttggaaagaccgaaacaggagaatttttcagcatcacattgatcatctagaagctcttcttgaaagggttaaaatccaaac 31963119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 11266090 - 11265799
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| ||||||||||| ||| |||||||||| |||||  ||||||||||  | ||||||||||||||  | ||||||| | |||||||        
T  11266090 gtgtggtaaggaggaggaaagggaccatttgttttttcaatgtgactattatggtcggttatggctcttgatttcgaattggcttggttttgttacggtg 11265991  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
     |  | || ||||||    ||||||||  ||| |||||| ||||||| | ||| ||||  || |||| || || |||||||||||||||||||||||| |    
T  11265990 ctacacggaaatttaacaacacatgctaatcagttttgtgctcttggaggtttctcaaggaagtctatgaaagcttttactattatttggatttcggtct 11265891  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaact 300  Q
     |||  | |||||||||||| | |||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||    
T  11265890 tatttgttatttggaaagatcgtaacaggaggatttttcagcatcatttggatcatcttgaagctctccttgaaagggttaaacttcaaact 11265799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 27891763 - 27891472
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||| | ||||||||||| ||  | ||| ||| |||||||||        
T  27891763 gtgtggtaaggaggaggaaagggaccatttgttttttcaatgtgatcattatggtcgattatggctcttgatatcgaattggtttggtattgttacggtg 27891664  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  |||| ||| ||  ||||||||||  ||| |||||| ||||||| |  || ||||| || |||||||||  |||||||||||| ||||||| ||| |    
T  27891663 tttcatggcaatatattttcacatgctaatcagttttgtgctcttggagggttctcaaagaagtctaggacatcttttactattatatggatttaggtct 27891564  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaact 300  Q
     |||  | |||||||||||| | |||||||| ||||||||| | ||  |||| |||||  |||||||  |||||||||||||||| ||||||    
T  27891563 tatttgttatttggaaagatcgcaacaggaggatttttcagaaccaaattgaacatctcaaagctctttttgaaagggttaaacttcaaact 27891472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 6678907 - 6679023
Alignment:
Q  183 ttttactattatttggatttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaa 282  Q
    |||| ||||||||||||||||||| | ||| |  |||||||||||| | |||||||| ||||||||  | ||  ||| |||||| |||| ||| ||||||    
T  6678907 tttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaa 6679006  T
Q  283 agggttaaactccaaac 299  Q
    |||||||||||||||||    
T  6679007 agggttaaactccaaac 6679023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 29150159 - 29150080
Alignment:
Q  220 tggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    ||||||||| |||| || | |||||| ||  |||||||||||||||||||||||||  |||||||||||||||| |||||    
T  29150159 tggaaagatcgaaagagaaaaattttccaaaatcactttgatcatcttgaagctcttattgaaagggttaaacttcaaac 29150080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 5825127 - 5825416
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactt 109  Q
    ||||||||||| ||||||||||||||| |||||||||  |||||| |||||||| |  | |||||  || | ||  | ||| | | | |||||||   |     
T  5825127 tgtggtaaggaggaggaaagggatcatttgttttttcgatgtgattattatggtaggttatggcttatgctatcggattggttaggttttgttacggttc 5825226  T
Q  110 tgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttc 209  Q
    | ||||| |||||| |||||||||||  ||| |||||| | ||||| | ||| |||||  ||| |  |  || |||| ||||||||||||||||||| |     
T  5825227 ttaatggcaatttatattcacatgctaatcagttttgtgcacttggcggtttctcaaagcattatgtgcaagctttttctattatttggatttcggtctt 5825326  T
Q  210 attcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    ||| |  |||||||||||| | |||||||| ||||||||  | ||  ||| |||||| ||||  || ||||||||||| |||||||||||    
T  5825327 atttactatttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatctggaagtccttcttgaaagggtcaaactccaaac 5825416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 10462299 - 10462584
Alignment:
Q  14 gtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactttgaa 113  Q
    ||||||| ||||||||||||||| ||||||| || |||||| ||||||||||  | |||||  |||| ||  | ||| | | | |||||||   | | ||    
T  10462299 gtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgatatcggattggttaggttttgttacggttctcaa 10462398  T
Q  114 tggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttcattc 213  Q
    ||| |||||| ||||||||||    ||  ||||| ||||||| | ||| ||||| ||||||  || ||  ||||||||||||||||||||||| | |||     
T  10462399 tggcaatttatattcacatgcaaaccagatttgtgctcttggaggtttctcaaagaattctgtgaaagcatttactattatttggatttcggtcttattt 10462498  T
Q  214 atcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    |  || ||||||||| | || ||||| ||||| ||  | ||  ||| |||| | |||| ||| |||||||||||||||||||||||    
T  10462499 actatatggaaagatcgcaataggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggttaaactccaaac 10462584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 298
Target Start/End: Complemental strand, 1258532 - 1258236
Alignment:
Q  3 gacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgtt 102  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||| |||| ||||||||| || |||||||||||||||||||||||||||| |||||||    
T  1258532 gactttgtgtggtaaagaagaggaaagggaccatctgttttttcactgtgctcattatggccgcctttggctcttgatttctcagtggcttggtattgtt 1258433  T
Q  103 acaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggattt 202  Q
    ||||||||| ||||||||||||| ||||||||| | ||||||||| ||||||| | |||||||||||| ||||||||| | |||||| ||||||||||||    
T  1258432 acaactttgcatggtaatttacactcacatgctacccaattttgtgctcttggaggtttttcaaaaaactctaggacaagatttactgttatttggattt 1258333  T
Q  203 cggtttcattcatcatttggaaagatagaaacaggagaat-ttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaa 298  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||  |||||||||||||||||||||    
T  1258332 cggttttattcttcatttggaaagatagaaacaggagaattttttcataatcactttgatcatcttgaagctctctttgaaagggttaaactccaaa 1258236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 33936937 - 33937222
Alignment:
Q  1 gcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattg 100  Q
    ||||||| |||||||||||||||||||||||| |||||||           ||||| |||||||| |||||||||||||||||||||||||||| ||||     
T  33936937 gcgactttgtgtggtaaggaagaggaaagggaccatctgt-----------gatcactatggtcgtctttggctcttgatttctcagtggcttggtatta 33937025  T
Q  101 ttacaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggat 200  Q
    ||||| ||||| ||||||||||||| ||||||||| | ||||||||| ||||||| | ||||||||||||  ||| |||||| |||||| ||||||||||    
T  33937026 ttacagctttgcatggtaatttacactcacatgctacccaattttgtgctcttggaggtttttcaaaaaa--ctacgacaggatttactgttatttggat 33937123  T
Q  201 ttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33937124 ttcggttttattcgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctctccttgaaagggttaaactccaaac 33937222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 75 - 299
Target Start/End: Complemental strand, 22298911 - 22298687
Alignment:
Q  75 cttgatttctcagtggcttgatattgttacaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattct 174  Q
    |||| |||| || ||||||| |||||||||   |||  ||||||||||||| ||||||||| | ||||||||| ||||||| | ||| |||||||| |||    
T  22298911 cttggtttcacattggcttggtattgttacggttttacatggtaatttacactcacatgctacccaattttgtgctcttggaggtttctcaaaaaactct 22298812  T
Q  175 aggacaggttttactattatttggatttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctc 274  Q
    |||||||| |||||| | |||||||||||||||  |||| |||| || |||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  22298811 aggacaggctttactgtcatttggatttcggttatattcgtcatatgaaaagattgaaacaggagaatttttcaaaatcactttgatcatcttgaagctc 22298712  T
Q  275 tacttgaaagggttaaactccaaac 299  Q
    | |||||||||||||||||||||||    
T  22298711 tccttgaaagggttaaactccaaac 22298687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 38938536 - 38938246
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactt 109  Q
    ||||||||||| ||||||||||| ||| | |||||||| |||||| ||||||||||| | || |||||||| ||  | ||||||| | ||||||     |    
T  38938536 tgtggtaaggaggaggaaagggaccatttattttttcaatgtgattattatggtcgattatgactcttgatatcgaattggcttggttttgttatggtgt 38938437  T
Q  110 tgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttc 209  Q
    | ||||| |||||| || ||||||||  ||| |||||| ||||| | |  |||||||| ||||||| || || ||||||||||||||||||||| || |     
T  38938436 ttaatggcaatttatatacacatgctaatcatttttgtgctcttagaggcttttcaaagaattctatgaaagcttttactattatttggatttctgtctt 38938337  T
Q  210 attcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaact 300  Q
    |||  | |||||||||||| | |||| ||  ||||| ||  | ||  | || |||||||||||||| ||||||||||||||||| ||||||    
T  38938336 atttgttatttggaaagatcgcaacatgatgattttccaaaaccatatggaccatcttgaagctcttcttgaaagggttaaacttcaaact 38938246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 27914759 - 27915048
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactt 109  Q
    ||||||||||| ||||||||||||||| ||||||| || |||||| ||||||||||  | |||||  |||| ||  | ||| | | | |||||||   |     
T  27914759 tgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgatatcagattggttaggttttgttacggttc 27914858  T
Q  110 tgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttc 209  Q
    | ||||| |||||| ||||||||||    || |||||| ||||||| | ||| ||||| ||||||  || ||  ||||||||||||||||||||||| |     
T  27914859 tcaatggcaatttatattcacatgcaaaccagttttgtgctcttggaggtttctcaaagaattctttgaaagcatttactattatttggatttcggtctt 27914958  T
Q  210 attcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    ||| |  || ||||||||| | |||||||| ||||| ||  | ||  ||| |||| |  ||| ||| ||||||||||| |||||||||||    
T  27914959 atttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttgaaagttcttcttgaaagggtcaaactccaaac 27915048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 21963299 - 21963183
Alignment:
Q  183 ttttactattatttggatttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaa 282  Q
    |||| ||||||||||||||||||| | ||| |  |||||||||||| | |||||||| ||||||||  | ||  ||| |||||| ||||  || ||||||    
T  21963299 tttttctattatttggatttcggtcttatttactatttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatctggaagtccttcttgaa 21963200  T
Q  283 agggttaaactccaaac 299  Q
    ||||| |||||||||||    
T  21963199 agggtcaaactccaaac 21963183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 298
Target Start/End: Complemental strand, 23384805 - 23384619
Alignment:
Q  112 aatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttcat 211  Q
    ||||| |||||| ||||||||||   ||| |||||| ||||||| | ||| ||||| ||||||  || ||  ||| ||||||||||||||||||| | ||    
T  23384805 aatggcaatttatattcacatgcaaatcagttttgtactcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 23384706  T
Q  212 tcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaa 298  Q
    | |  || |||||||||   |||||||| ||||||||  | ||  ||| |||| | |||| ||| ||||||||||| ||||||||||    
T  23384705 ttactatatggaaagatcacaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaa 23384619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 30275953 - 30275897
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcga 66  Q
    ||||||||||| |||||||| |||||| ||||||| || |||||| |||||||||||    
T  30275953 tgtggtaaggaggaggaaagagatcatttgtttttccaatgtgattattatggtcga 30275897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 32349938 - 32349882
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcga 66  Q
    ||||||||||| ||||||||||||||| ||||||| || || ||| |||||||||||    
T  32349938 tgtggtaaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcga 32349882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 32349785 - 32349703
Alignment:
Q  163 tcaaaaaattctaggacaggttttactattatttggatttcggtttcattcatcatttggaaagatagaaacaggagaatttt 245  Q
    ||||| ||||||| || || |||||||||||||||||||||||| | || ||  || ||||||||| | |||||||| |||||    
T  32349785 tcaaagaattctatgaaagcttttactattatttggatttcggtcttatacactatatggaaagatcgcaacaggaggatttt 32349703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 21963472 - 21963419
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggt 63  Q
    ||||||||||| ||||||| ||||||| |||||||||  |||||| ||||||||    
T  21963472 tgtggtaaggaggaggaaaaggatcatttgttttttcgatgtgattattatggt 21963419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 3 - 299
Target Start/End: Original strand, 5391668 - 5391964
Alignment:
Q  3 gacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgtt 102  Q
    ||||| |||||||||||||||||||||| ||||  |||||||| |||||||||||||||| || |||||||| || |||||||||||||||| ||| |||    
T  5391668 gactttgtgtggtaaggaagaggaaaggtatcacttgttttttaattgtgatcattatgggcgtctttggcttttaatttctcagtggcttggtatagtt 5391767  T
Q  103 acaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggattt 202  Q
    ||||||||||||||||||||| | || |||||| ||||||||||| ||||||| | ||| |||||||| ||||||||||| |||||  |||| |||||||    
T  5391768 acaactttgaatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggattt 5391867  T
Q  203 cggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    | |||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||||||| |||||    
T  5391868 ctgttttattcgtcatttggaaagatagaaacaggagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaac 5391964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 28605044 - 28605328
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| |||||||| || ||| ||||||| || |||||||||||||||||  | ||||||||||| ||  | ||| ||| |||||||||        
T  28605044 gtgtggtaaggaggaggaaagagaccatttgtttttccaatgtgatcattatggtcggttatggctcttgatatcgaattggtttggtattgttactgtg 28605143  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  |||| ||| ||  ||||||||||  ||| |||||| ||||||| |  || || || || |||| ||||| |||||||||||||||||||||||| |    
T  28605144 tttcatggcaatctattttcacatgctcatcagttttgtgctcttggagggttctccaagaagtctatgacagcttttactattatttggatttcggtct 28605243  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaact 293  Q
     |||  | |||||||||||| | |||||||| ||||||||| | ||   ||| ||||||||||||||  ||||||||||||||||    
T  28605244 tatttgttatttggaaagatcgtaacaggaggatttttcagaaccaaaatgaacatcttgaagctctttttgaaagggttaaact 28605328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 9759662 - 9759949
Alignment:
Q  11 gtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaacttt 110  Q
    |||||||||| || |||||||| |||||||||||||| || || || || || || |||||||||||||| ||||| ||| ||| ||| || ||   |||    
T  9759662 gtggtaaggaggatgaaagggaccatctgttttttcaatgcgaccactacgggcggctttggctcttgatctctcattggtttggtatcgtcacggtttt 9759761  T
Q  111 gaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttca 210  Q
      |||||||||||||  ||||||||   ||||||||||||||||| | ||| ||||| || |||||||| || ||||||  ||| |||||||||   | |    
T  9759762 acatggtaatttacacccacatgctaaccaattttgtcctcttggaggtttctcaaagaactctaggacgggctttactgctatatggatttcgacatta 9759861  T
Q  211 ttcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaa 298  Q
    ||  | |||||||||||| | ||||||||||| |||||  ||||  ||||||||||||| ||||| ||||  ||||||||||| ||||    
T  9759862 tttgttatttggaaagatcgtaacaggagaatatttcaaaatcaaattgatcatcttgatgctcttcttgggagggttaaacttcaaa 9759949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 299
Target Start/End: Complemental strand, 17227837 - 17227703
Alignment:
Q  165 aaaaaattctaggacaggttttactattatttggatttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcat 264  Q
    |||||| ||||| |||| |||||||||||||||||||||||| | |||  | |||||||||||| | ||||  |||||||||||  ||||| ||||| |     
T  17227837 aaaaaactctagaacagcttttactattatttggatttcggtgttatttgttatttggaaagatcgcaacaaaagaatttttcaaaatcacattgattag 17227738  T
Q  265 cttgaagctctacttgaaagggttaaactccaaac 299  Q
    |||| |||||| ||| |||||||||||||||||||    
T  17227737 cttgcagctcttcttaaaagggttaaactccaaac 17227703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 290
Target Start/End: Complemental strand, 667219 - 667047
Alignment:
Q  118 aatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttcattcatca 217  Q
    |||||| || ||||||||  ||| |||||| ||||||| | ||| ||||| |||| || || || |||||||||||||||||||||||| | |||  | |    
T  667219 aatttaaatacacatgctaatcagttttgtgctcttggaggtttctcaaagaattatatgaaagcttttactattatttggatttcggtcttatttgtta 667120  T
Q  218 tttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaa 290  Q
    | ||||||||| | |||||||| ||||| ||  | ||  | |||||| |||||||||| |||||||| |||||    
T  667119 tatggaaagatcgcaacaggaggattttccaaaaccatatggatcattttgaagctcttcttgaaagcgttaa 667047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 18295554 - 18295610
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcga 66  Q
    ||||||||||| ||||||||||||||| ||||||| || || ||| |||||||||||    
T  18295554 tgtggtaaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcga 18295610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 47553362 - 47553064
Alignment:
Q  1 gcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattg 100  Q
    ||||||| |||||||||||||||||| ||||| ||||||||||||  ||||||||||||||| |||||||||||  | |||||||||||||||| |||||    
T  47553362 gcgactttgtgtggtaaggaagaggatagggaccatctgttttttacttgtgatcattatgggcgactttggcttctaatttctcagtggcttggtattg 47553263  T
Q  101 ttacaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggat 200  Q
    |||||||| |||||||||||||| | || |||||| |||||||| || ||||||| | ||| || ||||| |||||||||||||||||  |||| |||||    
T  47553262 ttacaactctgaatggtaatttatactctcatgctactcaatttagtgctcttggaggtttctctaaaaagtctaggacaggttttacagttatctggat 47553163  T
Q  201 ttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    ||| |||| |||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||| ||||||| |||||    
T  47553162 ttcagttttattcgtcatttggaaagatagaaacaggagaatttttcagaatcattttgatcatcttgacgctctgcttgaaaggattaaacttcaaac 47553064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 45649312 - 45649607
Alignment:
Q  3 gacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgtt 102  Q
    ||||| |||||||||||||||||||||||||||  |||||||| |||||||||||||||| || |||||||| || |||||||||||||||| ||| |||    
T  45649312 gactttgtgtggtaaggaagaggaaagggatcacttgttttttaattgtgatcattatgggcgtctttggcttttaatttctcagtggcttggtatagtt 45649411  T
Q  103 acaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggattt 202  Q
    |||||| |||||||||||||| | || |||||| ||||||||||| ||||||| | ||| |||||||| ||||||||||| |||||  ||||||||||||    
T  45649412 acaactctgaatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatttggattt 45649511  T
Q  203 cggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaa 298  Q
    | |||| |||| ||||||| |||||||||||| |||||||||||||| |||||| ||||||||||| |||||| ||||||||| ||||||| ||||    
T  45649512 ctgttttattcgtcatttgaaaagatagaaactggagaatttttcagaatcactctgatcatcttggagctcttcttgaaaggattaaacttcaaa 45649607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 22865905 - 22866195
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||| || |||||||||||||||| ||| |||||| ||    
T  22865905 gtgtggtaaggaagaggaaagggatcatctgtttttcacttgtgatcattatgggcgactttggcttttaatttctcagtggcttggtatcgttacagct 22866004  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
     |||||||||||||| | || |||||| |||||||||||  |||||| | ||| |||||||| ||||||||| ||||||   |||| |||||||| ||||    
T  22866005 ctgaatggtaatttatactctcatgctactcaattttgtggtcttggaggtttctcaaaaaagtctaggacaagttttagagttatctggatttcagttt 22866104  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
     |||| ||||||||||||||||||||| ||||||||||||| |||| | |||||||||||||||||| ||||||||| ||||||| |||||    
T  22866105 tattcgtcatttggaaagatagaaacatgagaatttttcagaatcattctgatcatcttgaagctcttcttgaaaggattaaacttcaaac 22866195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 27868965 - 27868685
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||||||||| | ||| ||| ||||||||||||||||||||||||| || ||||| || ||||| || |||||||||| |||||||||   |    
T  27868965 gtgtggtaaggaagaggatatggaccatttgttttttcattgtgatcattatggacggctttgacttttgatctcacagtggcttggtattgttacggtt 27868866  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
     |  |||||||||||||||| ||||||  |||||||||| || |||| | ||| ||||| || ||||||||| ||||||||||||||||||||| |        
T  27868865 ctacatggtaatttacattctcatgctaatcaattttgtgcttttggaggtttctcaaagaactctaggacaagttttactattatttggattttg---- 27868770  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
          |||||||||||||  ||||||||| |||||||||||||||| |||||||||| |||||||| ||||||||| ||||| |||||||    
T  27868769 ------tcatttggaaagaccgaaacaggataatttttcagcatcacattgatcatctagaagctcttcttgaaaggattaaaatccaaac 27868685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 40891921 - 40892211
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| ||||||| ||| ||| ||||||| || |||||| |||||||||   | ||||| ||||| ||  | ||||||| | ||||||||       
T  40891921 gtgtggtaaggaggaggaaatggaccatttgtttttccaatgtgattattatggtcagttatggcttttgatatcaaattggcttggttttgttacagtg 40892020  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  |||| |||||| || |||||| |  ||| |||||  ||||  | |  || ||||| ||||||| || || |||||||||||||||||||||||| |    
T  40892021 tttcatggcaatttatatacacatgataatcagttttgcgctctaagagacttctcaaagaattctatgaaagcttttactattatttggatttcggtct 40892120  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
     ||| |  || ||||||||| | |||||||| ||||| ||  | ||  |||||||||| |||||||| ||||||||||||||||| |||||    
T  40892121 tatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgatcatctggaagctcttcttgaaagggttaaacttcaaac 40892211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 9403283 - 9403572
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactt 109  Q
    ||||||||||| ||||||||||||||| ||||||| || |||||| ||||||||||  | |||||  || | ||  | ||| | | | |||||||   |     
T  9403283 tgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttc 9403382  T
Q  110 tgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttc 209  Q
    | ||||| |||||| ||||||||||   ||| |||||| | ||||| | ||| |||||  |||||  || ||  ||| ||||||||||||||||||| |     
T  9403383 tcaatggcaatttatattcacatgcaaatcagttttgtgcacttggaggtttctcaaagcattctttgaaagcattttctattatttggatttcggtctt 9403482  T
Q  210 attcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    ||| |  |||||||||||| | |||||||| ||||||||  | ||  ||| |||||| |||| ||| ||||||||||| |||||||||||    
T  9403483 atttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggtcaaactccaaac 9403572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 20705649 - 20705933
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| |||||||| || ||| ||||||| || |||||||||||||| ||  | ||||| ||||| ||  | ||| ||| |||||||||        
T  20705649 gtgtggtaaggaggaggaaagagaccatttgtttttccaatgtgatcattatggccggttatggcttttgatatcgaattggtttggtattgttactgtg 20705748  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  |||| | ||||  ||||||| ||  ||| |||||| | ||||| |  || || || || |||| | ||| |||||||||||||||||||||||| |    
T  20705749 tttcatggcactttattttcacatactcatcagttttgtgcacttggagggttctccaagaagtctacgtcagcttttactattatttggatttcggtct 20705848  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaact 293  Q
     |||| | |||||||||||| |||| ||||| ||||||||| | ||   ||| ||||| ||||||||   |||||||||||||||    
T  20705849 tattcgttatttggaaagatcgaaataggaggatttttcagaaccaacatgaacatctcgaagctctttctgaaagggttaaact 20705933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 20873693 - 20873977
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| |||||||| || ||| ||||||| || |||||||||||||| ||  | ||||| ||||| ||  | ||| ||| |||||||||        
T  20873693 gtgtggtaaggaggaggaaagagaccatttgtttttccaatgtgatcattatggccggttatggcttttgatatcgaattggtttggtattgttactgtg 20873792  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  |||| | ||||  ||||||| ||  ||| |||||| | ||||| |  || || || || |||| | ||| |||||||||||||||||||||||| |    
T  20873793 tttcatggcactttattttcacatactcatcagttttgtgcacttggagggttctccaagaagtctacgtcagcttttactattatttggatttcggtct 20873892  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaact 293  Q
     |||| | |||||||||||| |||| ||||| ||||||||| | ||   ||| ||||| ||||||||   |||||||||||||||    
T  20873893 tattcgttatttggaaagatcgaaataggaggatttttcagaaccaacatgaacatctcgaagctctttctgaaagggttaaact 20873977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 37075921 - 37076037
Alignment:
Q  183 ttttactattatttggatttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaa 282  Q
    |||| ||||||||||||||||||| | ||| |  |||||||||||| | |||||||| ||||||||  | ||  ||| |||||| |||| ||| ||||||    
T  37075921 tttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaa 37076020  T
Q  283 agggttaaactccaaac 299  Q
    |||||||||||||||||    
T  37076021 agggttaaactccaaac 37076037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 291
Target Start/End: Complemental strand, 27278627 - 27278385
Alignment:
Q  49 tgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactttgaatggtaatttacattcacatgcttctcaattttgtc 148  Q
    ||||| |||||||||||  | ||||||||||| |  || ||| ||| ||||||||| | |||  |||| |||||| || ||||||||  ||| ||||||     
T  27278627 tgtgaccattatggtcggttatggctcttgatattgcattggtttggtattgttacgattttacatggcaatttaaatacacatgctaatcagttttgtg 27278528  T
Q  149 ctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttcattcatcatttggaaagatagaaacaggagaatttttca 248  Q
    ||||||  | ||| ||||  |||||||| |||| |||||||||||| ||| ||| ||| | |||  | || | ||||||| | ||||| | ||||||  |    
T  27278527 ctcttgcaggtttctcaaggaattctagaacagcttttactattatatgggttttggtcttatttgttatattgaaagatcgcaacagtataattttcta 27278428  T
Q  249 gcatcactttgatcatcttgaagctctacttgaaagggttaaa 291  Q
      ||||| ||||||||||||||||||| ||| |||||||||||    
T  27278427 aaatcacattgatcatcttgaagctcttcttaaaagggttaaa 27278385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 586848 - 586792
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcga 66  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||    
T  586848 tgtggtaaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcga 586792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 37075748 - 37075803
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcg 65  Q
    ||||| ||||| ||||||||||||||| |||||||||| |||||| ||||||||||    
T  37075748 tgtggcaaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcg 37075803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 12121650 - 12121594
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcga 66  Q
    ||||||||||| ||||||| ||||||| ||||||| || || ||| |||||||||||    
T  12121650 tgtggtaaggaggaggaaatggatcatttgtttttccaatgcgattattatggtcga 12121594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 10801829 - 10802128
Alignment:
Q  1 gcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattg 100  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||  ||||| ||||||||| ||||||||||| || |||||| |||||||||||||||    
T  10801829 gcgactttgtgtggtaaggaagaggatagggatcatctgttttttacttgtgttcattatgggcgactttggcttttaatttctaagtggcttgatattg 10801928  T
Q  101 ttacaactttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttc-aaaaaattctaggacaggttttactattatttgga 199  Q
    |||||||| |||||||||||||| | || |||||| |||||||| || ||||||| | ||| || |||||| |||||||||||||||||  |||| ||||    
T  10801929 ttacaactctgaatggtaatttatactctcatgctactcaatttagtgctcttggaggtttctctaaaaaagtctaggacaggttttacagttatctgga 10802028  T
Q  200 tttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    |||| |||| |||| ||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||| ||||||||| ||||||| |||||    
T  10802029 tttcagttttattcgtcatttggaaagatagaaacaggagaatttttcagaatcattctgatcatcttgacgctctgcttgaaaggattaaacttcaaac 10802128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 26390399 - 26390688
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| || |||||||  ||| |||| ||||| || |||||||||||||||||||| |||||||| || || || |||| |||||||||   |    
T  26390399 gtgtggtaaggaggacgaaaggggccatttgttctttcaatgcgatcattatggtcgactttg-ctcttgatatcgcattgacttggtattgttacggtt 26390497  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  |||| || || |||  |||||||   || |||||| | || || | ||| ||||| ||||||||||||  ||||||||||||||||| ||| || |    
T  26390498 ttacatggcaaattgcatatacatgctaaccagttttgtgccctcggtggtttctcaaagaattctaggacaacttttactattatttggacttctgtct 26390597  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
     |||  | || ||||||||| | |||||||||||||| ||  |||||  ||||||||| || ||||| ||||||||| |||| || |||||    
T  26390598 tatttgttatatggaaagatcgcaacaggagaattttccaaaatcacagtgatcatctagaggctcttcttgaaaggattaagcttcaaac 26390688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 300
Target Start/End: Original strand, 31423481 - 31423663
Alignment:
Q  118 aatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttcattcatca 217  Q
    |||||| |||||||||||  ||| |||||| ||||||| | ||| ||||| || |||||||||  |||||||||||| ||||||||||| | |||  | |    
T  31423481 aatttaaattcacatgctaatcagttttgtgctcttggaggtttctcaaagaactctaggacaacttttactattatatggatttcggtcttatttgtta 31423580  T
Q  218 tttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaact 300  Q
    |||| |||||| | |||||||| ||||| ||  | ||  |||||||||| ||||||||  |||||||||||||||| ||||||    
T  31423581 tttgaaaagatcgcaacaggaggattttccaaaaccaaattgatcatctcgaagctctttttgaaagggttaaacttcaaact 31423663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 29532422 - 29532327
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttac 104  Q
    ||||| |||||| ||||||||||||||| |||| ||||| || |||||||||| |||||||||||||||||| || || ||||||  |||||||||    
T  29532422 gtgtgataaggaggaggaaagggatcatttgttctttcaatgcgatcattatgatcgactttggctcttgatatcgcactggcttagtattgttac 29532327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 112 - 299
Target Start/End: Complemental strand, 37666315 - 37666128
Alignment:
Q  112 aatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttcat 211  Q
    ||||||| |||||||||| ||||||||||||||||| |||| |||| |||||||||||| ||||||||| ||||||||||||||||||||||||||| ||    
T  37666315 aatggtattttacattcaaatgcttctcaattttgtgctctcgggggtttttcaaaaaactctaggacaagttttactattatttggatttcggttttat 37666216  T
Q  212 tcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  37666215 tcatcatttggaaagatagaaacaggagaatttttcagcatcaatttgatcatcttgaagctctacttgaaagggtcaaactccaaac 37666128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 37668926 - 37668810
Alignment:
Q  1 gcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattg 100  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| | |||    
T  37668926 gcgacttcgtgtggtaaggaataggaaagggacaatctgttttttcgttgtgatcattatggtcgactttgactcttgatttctcagtggcttggttttg 37668827  T
Q  101 ttacaactttgaatggt 117  Q
    |||||||||||||||||    
T  37668826 ttacaactttgaatggt 37668810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 5557330 - 5557041
Alignment:
Q  11 gtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaacttt 110  Q
    |||||||||| ||||||||||| ||| |||||||| | |||||||||||||||||| | || |||||||| ||  | ||| ||| |||||||||    ||    
T  5557330 gtggtaaggaggaggaaagggaccatttgtttttttaatgtgatcattatggtcgattatgactcttgatatcgaattggtttggtattgttacggtgtt 5557231  T
Q  111 gaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttca 210  Q
      | | |||||||  ||||||||||  ||| |||||| ||||||| ||||| ||||| |||||| ||| |  |||||||||||| ||||||||||| | |    
T  5557230 tcaagataatttaatttcacatgctaatcagttttgtgctcttggagctttctcaaagaattcttggataacttttactattatatggatttcggtctta 5557131  T
Q  211 ttcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaact 300  Q
    ||  |  ||||||||||| | |||||||| ||||||||  | ||  |||||||||| ||||||||  |||||||||||||||| ||||||    
T  5557130 tttgttgtttggaaagatcgcaacaggaggatttttcaataccaaattgatcatctcgaagctctttttgaaagggttaaacttcaaact 5557041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 49369832 - 49369542
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||| | ||||||||||| ||  | ||||||| | |||||||        
T  49369832 gtgtggtaaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttgttacggtg 49369733  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  |||  |||||| || | ||||||   || |||| | | ||||| | ||||||||| |||| || || || |||  ||||||||||||||||| |||    
T  49369732 tttcatgacaatttatatactcatgctaaccagttttatgcccttggaggtttttcaaagaattatacgaaagctttgtctattatttggatttcgattt 49369633  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
     |||  | |||||||||||| | || | ||  ||||| ||  | || || | ||||||||||||||| ||||||||||||||||| |||||    
T  49369632 tatttgttatttggaaagattgcaatatgaagattttccaaaaccatttgggtcatcttgaagctcttcttgaaagggttaaacttcaaac 49369542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 41342966 - 41343255
Alignment:
Q  10 tgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactt 109  Q
    ||||||||||| ||||||||||||||| ||||||| || |||||| ||||||||||  | ||||| ||| | ||  | ||||||| | |||||||   ||    
T  41342966 tgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttttgctatcggattggcttggttttgttacggttt 41343065  T
Q  110 tgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttc 209  Q
    | ||||| |||||| || || |||||  ||| |||||  ||||||| |  || ||||| ||||||| || ||  ||||||||||||||||||||||| |     
T  41343066 ttaatggcaatttatatacaaatgctaatcagttttgcgctcttggaggcttctcaaagaattctatgaaagcatttactattatttggatttcggtctt 41343165  T
Q  210 attcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
    ||| |  || ||||||||| | || ||||| ||||| ||  | ||  ||| |||| | |||| | ||||||||||||| ||||| |||||    
T  41343166 atttactatatggaaagatcgcaataggaggattttccaaaaccaaattgttcatttggaagttatacttgaaagggtcaaacttcaaac 41343255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 296
Target Start/End: Original strand, 28521006 - 28521281
Alignment:
Q  21 agaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaactttgaatggtaat 120  Q
    |||||| ||||| ||| |||||||| | ||||| || || |||||| | ||||||||||| || || ||||||| ||||||||| | |||  ||||| |     
T  28521006 agaggacagggaccatttgttttttaagtgtgaccactacggtcgattgtggctcttgatctcacattggcttggtattgttacgatttttcatggtgac 28521105  T
Q  121 ttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggtttcattcatcattt 220  Q
    ||| ||   ||| |   | | |||||| ||||||| |  |||||||||||||  ||||||  ||| |||||||||||||| |||||   |||  | ||||    
T  28521106 ttaaatattcattccaataagttttgtgctcttggaggcttttcaaaaaatttcaggacatctttcactattatttggatgtcggtcatatttgttattt 28521205  T
Q  221 ggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactcca 296  Q
    ||||||| |  | || ||||||||||||  ||||| ||||||| |||| | | || ||||||| ||||||||||||    
T  28521206 ggaaagacaacagcaagagaatttttcataatcacgttgatcaacttgcaacgcttcttgaaaaggttaaactcca 28521281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 58553 - 58843
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| ||||||||||| | | |||||||||| |||||  ||||||||||  | ||||||||||| ||  | ||||||| | |||||||        
T  58553 gtgtggtaaggaggaggaaagggaccgtttgttttttcaatgtgacaattatggtcggttatggctcttgatatcaaattggcttggttttgttacggtg 58652  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  | |  |||||| || ||||||||  ||| |||||| ||||||| | ||| ||||| ||  ||| || || |||||||||||||||||||||||| |    
T  58653 tttcacgacaatttaaatacacatgctaatcagttttgtgctcttggaggtttctcaaagaacgctatgatagcttttactattatttggatttcggtct 58752  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
     |||  | || ||||||||| | |||||||| ||||| ||  | ||  | ||||||||||||||||| ||||||||||||||||| |||||    
T  58753 tatttgttatatggaaagatcgcaacaggaggattttccaaaaccatatggatcatcttgaagctcttcttgaaagggttaaacttcaaac 58843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 74363 - 74073
Alignment:
Q  9 gtgtggtaaggaagaggaaagggatcatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttgatattgttacaact 108  Q
    |||||||||||| ||||||| ||| ||| ||||||| || |||||| |||||||||   | ||||| ||||| ||  | ||||||| | ||||||||       
T  74363 gtgtggtaaggaggaggaaatggaccatttgtttttccaatgtgattattatggtcagttatggcttttgatatcaaattggcttggttttgttacagtg 74264  T
Q  109 ttgaatggtaatttacattcacatgcttctcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggttt 208  Q
    ||  |||| |||||| || |||||| |  ||| |||||  ||||  | |  || ||||| ||||||| || || |||||||||||||||||||||||| |    
T  74263 tttcatggcaatttatatacacatgataatcagttttgcgctctaagagacttctcaaagaattctatgaaagcttttactattatttggatttcggtct 74164  T
Q  209 cattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaac 299  Q
     ||| |  || ||||||||| | |||||||| ||||| ||  | ||  |||||||||| |||||||| ||||||||||||||||| |||||    
T  74163 tatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgatcatctggaagctcttcttgaaagggttaaacttcaaac 74073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 299
Target Start/End: Original strand, 225056 - 225171
Alignment:
Q  184 tttactattatttggatttcggtttcattcatcatttggaaagatagaaacaggagaatttttcagcatcactttgatcatcttgaagctctacttgaaa 283  Q
    |||||||| |||||||||||||||| |||  | || ||||||||| | || |||||||| |||||  | ||  ||| |||||||||||||||  | ||||    
T  225056 tttactatcatttggatttcggttttatttgttatatggaaagatcgcaataggagaatatttcaaaagcaggttgttcatcttgaagctcttttggaaa 225155  T
Q  284 gggttaaactccaaac 299  Q
     ||||||||| |||||    
T  225156 aggttaaacttcaaac 225171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 11001 - 10933
Alignment:
Q  138 tcaattttgtcctcttggggctttttcaaaaaattctaggacaggttttactattatttggatttcggt 206  Q
    |||||||||| ||||||| | ||| ||||||||||| || |||  |||  |||||||||||||||||||    
T  11001 tcaattttgtgctcttggaggtttatcaaaaaattcaagtacaactttctctattatttggatttcggt 10933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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