View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_4 (Length: 536)
Name: NF10041_low_4
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Original strand, 4600768 - 4601288
Alignment:
| Q |
18 |
gtattgtgaattagatatcagaataaaaatacaaactgtccaatctctatctaacaaccgacatttaccggctgtagtgactgcaacgttgaagttgtag |
117 |
Q |
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| T |
4600768 |
gtattgtgaatcagatatcagaataaaaatacaaactgtccgatctctatctaacaaccgacatttaccggctgtagtgactgcaacgttgaagttgtag |
4600867 |
T |
|
| Q |
118 |
tcgatctggattggtaagagagtataccaaactgtacaaatgtatcaagccaagttgatgcaatttcatataaaatcagtctctaagaaacgtagctata |
217 |
Q |
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| T |
4600868 |
tcaatctggattggtaagagagtataccaaactgtacaaatgtatcaagccaagttgatgcaatttcatataaaatcagtctctaagaaaagtagctata |
4600967 |
T |
|
| Q |
218 |
ttacgacttatgg--------------ccgcaaccgcaattgtggccataatgtaaaacactttgaggtctctgagtctgcattgcaagttcgcaaccaa |
303 |
Q |
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| T |
4600968 |
ttacgactcatggttttaaattgaagtccgcaactgcagttgtggccgtaatgtaaaacactttgaggtctctgagtctgcattgcaagttcgcaaccaa |
4601067 |
T |
|
| Q |
304 |
aatttcaattgcatcggccgcattttcccacatttttccgtaatataatggttcatagcatgtaaagattacactgactaaaataactcgattaaaatta |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4601068 |
aatttcaattgcatcggccgcattttcccacatttttccgtaatataatggttcatagcatgtaaagattacactaactaaaataactcgattaaaatta |
4601167 |
T |
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| Q |
404 |
agtcggacaaaactcaacgcggctgttcaaaatctcacaaactttagttcaacatgtaatataggatttatgtgaaatctaccaaaacagattcttaccc |
503 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4601168 |
agtcggacataactcaacgcggctgttcaaaatctcacaaacttcagttcaacatgtaatataggatttaggtgaaatctaccaaaacagattcttaccc |
4601267 |
T |
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| Q |
504 |
aacagaaaatcagcctatgct |
524 |
Q |
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||||||||||||||||||||| |
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| T |
4601268 |
aacagaaaatcagcctatgct |
4601288 |
T |
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