View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_41 (Length: 302)
Name: NF10041_low_41
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 11177428 - 11177164
Alignment:
| Q |
8 |
ttcgtgttgtctggtgcgtgttgtttctattgttcaatatagtgcttgtttcacgactatcgttatttatcccgttccatcctcacttatattggcttcg |
107 |
Q |
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| T |
11177428 |
ttcgtgttgtctggtgcgtgttgtttctattgttcaatatagtgcttgtttcacgactatcgttatttatcccgttccatcctcacttatattggcttcg |
11177329 |
T |
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| Q |
108 |
tgcaggtattcggatcgaagcgagtgctttggtattggttctaactcgggtaggacttgtgctccagtttgagctgtgttaatattaatgaatttaagtt |
207 |
Q |
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| T |
11177328 |
tgcaggtattcggattgaagcgagtgctttggtattggttctaactcgggtaggacttgtgctccagtttgagctgtgttaatattgatgaatttaagtt |
11177229 |
T |
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| Q |
208 |
accccatagttgctggatttatatccaaaacatattgatgacactagtatatgaattactattaatat |
275 |
Q |
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| T |
11177228 |
accccatagttgctggatttatatccaaaaca---tgatgacacaagtatctgaattactattaatat |
11177164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 11184662 - 11184481
Alignment:
| Q |
12 |
tgttgtctggtgcgtgttgtttctattgttcaatatagtgcttgtttcacgactatcgttatttatcccgttccatcctcacttatattggcttcgtgca |
111 |
Q |
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| T |
11184662 |
tgttgtctggtgcgtgttgtttctattgttcaatatagtgcttgtttcacgactatctttatttatcccattccatcctcacttatgttggcttcgtgca |
11184563 |
T |
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| Q |
112 |
ggtattcggatcgaagcgagtgctttggtattggttctaactcgggtaggacttgtgctccagtttgagctgtgttaatatt |
193 |
Q |
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| T |
11184562 |
ggtattcggatcgaagcgagtgctttggtattggttcaaactcgggtaggacttgtgctccgggttgagctgtgttaatatt |
11184481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 11184444 - 11184321
Alignment:
| Q |
154 |
cgggtaggacttgtgctccagtttgagctgtgttaatattaatgaatttaagttaccccatagttgctggatttatatccaaaacatattgatgacacta |
253 |
Q |
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| T |
11184444 |
cgggtaggacttgtgctccagtttgagctgtgttaatattgatgaatttaagttaccccatagttgctggatttatatccaaaacatattgatgacacta |
11184345 |
T |
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| Q |
254 |
gtatatgaattactattaatattg |
277 |
Q |
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| T |
11184344 |
gcatatgaattactataaatattg |
11184321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 11196322 - 11196253
Alignment:
| Q |
211 |
ccatagttgctggatttatatccaaaacatattgatgacactagtatatgaattactattaatattgagg |
280 |
Q |
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| T |
11196322 |
ccataattgctggctttatatacaaaacttattgatgacacaagcatatgaattgcttttaatattgagg |
11196253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 11185476 - 11185408
Alignment:
| Q |
219 |
gctggatttatat-ccaaaacatattgatgacactagtatatgaattactattaatattgaggttatga |
286 |
Q |
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| T |
11185476 |
gctggatttttattccaaaacatctctacgacactagcatatgaattactattaatattgacgttatga |
11185408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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