View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_42 (Length: 292)
Name: NF10041_low_42
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 11491317 - 11491586
Alignment:
| Q |
7 |
ggacgttggaaagatatttcaaaagaatttgtggtgacaaagactccaattcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaag |
106 |
Q |
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| T |
11491317 |
ggacgttggaaagatatttcaaaagaatttgtggtaacaaagactccaattcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaag |
11491416 |
T |
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| Q |
107 |
atatagagaagaggaaaaagagaagaagcatacatgacacaaccttaaacaagaatggcacactagtcactctcgctgttgaacaagatgagattccttc |
206 |
Q |
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| T |
11491417 |
atatagagaagaggaaaaagagaagaagcatacatgacacaaccttaaacaagaatggcacactagtcactctcgctgttgaacaagatgagattccttc |
11491516 |
T |
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| Q |
207 |
agtcgagcaacaaagtgagactcctcctcaaggaatgcaacagacacaaacacaacaaaatgagatttct |
276 |
Q |
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| T |
11491517 |
agtcgagcaacaaagtgagactcctcctcaaggaatgcaacagacacaaacacaacaaaatgagatttct |
11491586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 38166590 - 38166865
Alignment:
| Q |
7 |
ggacgttggaaagatatttcaaaagaatttgtggtgacaaagactccaattcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaag |
106 |
Q |
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| T |
38166590 |
ggacgctggaaagatatttcaaaagaattcgtggtgacaaaaactccaactcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaag |
38166689 |
T |
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| Q |
107 |
atatagagaaga---ggaaaaagagaagaagcatacatgacacaaccttaaacaagaatggcacactagtcactctcgctgttgaaca---agatgagat |
200 |
Q |
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| T |
38166690 |
atatagagaagaaggagaaaaagagaaaaagtattcacgacacaaccttaaacaagaatgacacattggttactgtcgctgttgaacagcgagatgagat |
38166789 |
T |
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| Q |
201 |
tccttcagtcgagcaacaaagtgagactcctcctcaaggaatgcaacagacacaaacacaacaaaatgagatttct |
276 |
Q |
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| T |
38166790 |
tccttcagttgagctacaaagtgtgattcctcctcaaggaatgcaacagacacaaacacaacagaatgagatttct |
38166865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 38173284 - 38173015
Alignment:
| Q |
13 |
tggaaagatatttcaaaagaatttgtggtgacaaagactccaattcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaagatatag |
112 |
Q |
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| T |
38173284 |
tggaaagatatttcaaaagaattcgtggtgacaaaaactccaactcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaagatatag |
38173185 |
T |
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| Q |
113 |
agaaga---ggaaaaagagaagaagcatacatgacacaaccttaaacaagaatggcacactagtcactctcgctgttgaaca---agatgagattccttc |
206 |
Q |
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| T |
38173184 |
agaagaaggagaaaaagagaaaaagtattcacgacacaaccttaaacaagaatgacacattggttactgtcgctgttgaacagcgagatgagattccttc |
38173085 |
T |
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| Q |
207 |
agtcgagcaacaaagtgagactcctcctcaaggaatgcaacagacacaaacacaacaaaatgagatttct |
276 |
Q |
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| T |
38173084 |
agttgagctacaaagtgtgattcctcctcaaggaatgcaacagacacaaacacaacagaatgagatttct |
38173015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 38200508 - 38200239
Alignment:
| Q |
13 |
tggaaagatatttcaaaagaatttgtggtgacaaagactccaattcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaagatatag |
112 |
Q |
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| T |
38200508 |
tggaaagatatttcaaaagaattcgtggtgacaaaaactccaactcaaattgctagccatgcccaaaaatactttatccaccaaaatgtgaaagatatag |
38200409 |
T |
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| Q |
113 |
agaaga---ggaaaaagagaagaagcatacatgacacaaccttaaacaagaatggcacactagtcactctcgctgttgaaca---agatgagattccttc |
206 |
Q |
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| T |
38200408 |
agaagaaggagaaaaagagaaaaagtattcacgacacaaccttaaacaagaatgacacattggttactgtcgctgttgaacagcgagatgagattccttc |
38200309 |
T |
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| Q |
207 |
agtcgagcaacaaagtgagactcctcctcaaggaatgcaacagacacaaacacaacaaaatgagatttct |
276 |
Q |
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| T |
38200308 |
agttgagctacaaagtgtgattcctcctcaaggaatgcaacagacacaaacacaacagaatgagatttct |
38200239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 11484468 - 11484656
Alignment:
| Q |
7 |
ggacgttggaaagatatttcaaaagaatttgtggtgacaaagactccaattcaaattgctagccatgcccaaaaatactttat---ccaccaaaatgtga |
103 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||||| ||||||| |||||||||||| ||||| |||||||||||| | |||||||| || | |
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| T |
11484468 |
ggacgttggaaagatatttcaagagaatttgtgaaaacaaaaactccaactcaaattgctagtcatgctcaaaaatactttgttcaccaccaaactgcca |
11484567 |
T |
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| Q |
104 |
aagatatagagaagaggaaaaagagaagaagcatacatgacacaaccttaaacaagaatggcacactagtcactctcgctgttgaacaa |
192 |
Q |
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| T |
11484568 |
aagaaatagagaagaagaaaaagagaagaagtattcacgacataaccttaaacaataatgacacaatagtcactgtccctcttgaacaa |
11484656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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