View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_43 (Length: 291)
Name: NF10041_low_43
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_43 |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 33383256 - 33382969
Alignment:
| Q |
1 |
atccaacccattttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383256 |
atccaacccattttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaac |
33383157 |
T |
|
| Q |
101 |
gataggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383156 |
gataggtaccccagcaaccacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggc |
33383057 |
T |
|
| Q |
201 |
gaccaacctcttataattagtccctttccttccattcttttctcaaatccttctggtagccaatcttctccatcttctctgcttctcc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33383056 |
gaccaacctcttataattagtccctttccttccattcttttctcaaatccttctggtagccaatcttctccatcttctttgcttctcc |
33382969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 2 - 248
Target Start/End: Original strand, 33390799 - 33391045
Alignment:
| Q |
2 |
tccaacccattttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacg |
101 |
Q |
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|||| ||||| ||||| |||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||| |||| ||| | ||||||||||| |
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| T |
33390799 |
tccatcccatgttttagctccaacaggtacaccaattttaagtacatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaatc |
33390898 |
T |
|
| Q |
102 |
ataggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcg |
201 |
Q |
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|||||||| |||||| |||||| ||| ||| | | |||||||||||||||||||||| ||||||||| |||| |||| ||||||||| ||| || | |
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| T |
33390899 |
ataggtactccagcagctacactttccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggag |
33390998 |
T |
|
| Q |
202 |
accaacctcttataattagtccctttccttccattcttttctcaaat |
248 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33390999 |
accaacctcttataattagtccctttcctttcattcttttctcaaat |
33391045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 33401723 - 33401823
Alignment:
| Q |
56 |
caacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtc |
155 |
Q |
| |
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||||||||||||| |||||| ||||| | || |||||||| | |||||||| |||||| |||||||||||| ||| |||||||||||||||||| |
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| T |
33401723 |
caacttctcattgataaattgctcagctgaaagtggccaagtcgccataggtactccagcacacacaccttctaaagttgagttccatccacaatgagtc |
33401822 |
T |
|
| Q |
156 |
a |
156 |
Q |
| |
|
| |
|
|
| T |
33401823 |
a |
33401823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 5 - 278
Target Start/End: Original strand, 27688569 - 27688842
Alignment:
| Q |
5 |
aacccattttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgata |
104 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| || || || ||||||||||||| ||| |
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| T |
27688569 |
aacccactttttaactccaacaggtacaccagttttaagtacctcagtgaccaacttctcattgtaaaattgctcggccgccacaggccaagtaatcata |
27688668 |
T |
|
| Q |
105 |
ggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgacc |
204 |
Q |
| |
|
||||| ||||| || || ||||||||||| ||||||||||| ||||| ||||||||||| || |||||||| ||||||||||||| | ||| || |||| |
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| T |
27688669 |
ggtactccagctaccactccttctaaaaccgaattccatccgcaatgcgtcacaaatgccccgattgcttcatgttcaagaatcatcacttgtggagacc |
27688768 |
T |
|
| Q |
205 |
aacctcttataattagtccctttccttccattcttttctcaaatccttctggtagccaatcttctccatcttct |
278 |
Q |
| |
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||||||||||||||||||| ||||||||| |||||| ||| |||||||| |||||||| || |||||||||||| |
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|
| T |
27688769 |
aacctcttataattagtccttttccttccgttctttcctcgaatccttcaggtagccattcatctccatcttct |
27688842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 18989693 - 18989456
Alignment:
| Q |
11 |
ttttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtacc |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||| ||| ||| | ||||||||||| |||||||| |
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| T |
18989693 |
ttttttatctccaacaggtacaccaattttaagtacttcagttaccaacttctcattataaaattcctcaaaagctataggccaagtaatcataggtact |
18989594 |
T |
|
| Q |
111 |
ccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctc |
210 |
Q |
| |
|
|||||| | |||| ||| ||| | | |||||||||||||||||||||||||||||||| |||| |||| || |||||| ||| | | |||||||| |
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|
| T |
18989593 |
ccagcagccacactttccaaagttaagttccatccacaatgagtcacaaatgctccaatagctttatgttgaaaaatcaaaagttgaagaggccaacctc |
18989494 |
T |
|
| Q |
211 |
ttataattagtccctttccttccattcttttctcaaat |
248 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||||| |
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| T |
18989493 |
ttataattagtccttttcctttcattattttctcaaat |
18989456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 19001937 - 19001890
Alignment:
| Q |
201 |
gaccaacctcttataattagtccctttccttccattcttttctcaaat |
248 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| |||||||||||| |
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| T |
19001937 |
gaccaacctcttataattagtccgtttcctttcatccttttctcaaat |
19001890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 11646 - 11686
Alignment:
| Q |
131 |
aactgaattccatccacaatgagtcacaaatgctccaattg |
171 |
Q |
| |
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|||||||||||| ||||||||||||| |||||| ||||||| |
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| T |
11646 |
aactgaattccaaccacaatgagtcaaaaatgcaccaattg |
11686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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