View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_44 (Length: 290)
Name: NF10041_low_44
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_44 |
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| [»] scaffold0554 (1 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 108 - 273
Target Start/End: Complemental strand, 15885268 - 15885103
Alignment:
| Q |
108 |
atgttcaatgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaa |
207 |
Q |
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||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |
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| T |
15885268 |
atgttcaatgatgatgttttctagtattcgatcaatacgtctatgcaacctctcaagtttaggcctcaaaccggaaacaagttgaatccatttagatgaa |
15885169 |
T |
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| Q |
208 |
ggaaacagttcaccaatgtcaaaacctcctgcaattgattctcccttccccaaccacgcgaactct |
273 |
Q |
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| T |
15885168 |
ggaaacagttcacctatgtcaaaacctccagcaattgattctcccttccccaaagacgcgaactct |
15885103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 12610796 - 12610923
Alignment:
| Q |
124 |
ttttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacagttcaccaa |
223 |
Q |
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| T |
12610796 |
ttttctagtatttgatcaatttgcctatgcaacctctccagtttaggcctcaaaccggaaacacgttgaagccatttcgctgaaggaaataattcagcta |
12610895 |
T |
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| Q |
224 |
tgtcaaaacctcctgcaattgattctcc |
251 |
Q |
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| T |
12610896 |
tgtcaaaacctcctgcaattgattctcc |
12610923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 12637780 - 12637923
Alignment:
| Q |
108 |
atgttcaatgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaa |
207 |
Q |
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||||||| ||||||| ||| | | |||| |||||||| |||||||||| ||||| ||||| ||| ||||||||||| ||||||||||||||||||||| |
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| T |
12637780 |
atgttcattgatgatgtttactaatataagatcaatttgtctatgcaatacctcaattttagacctgaaaccagaaactagttgaagccatttagctgaa |
12637879 |
T |
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| Q |
208 |
ggaaacagttcaccaatgtcaaaacctcctgcaattgattctcc |
251 |
Q |
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| T |
12637880 |
ggaaacaattcacctatgtcaaaacctcctccaactgattctcc |
12637923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15885372 - 15885317
Alignment:
| Q |
1 |
atatctttgtcattatcatttccaccttggaattttagaagaacgtcaaccaaatc |
56 |
Q |
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| T |
15885372 |
atatctttttcattatcattgcgacgttggtattttagaagaacgtcaaccaaatc |
15885317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 12610691 - 12610727
Alignment:
| Q |
16 |
tcatttccaccttggaattttagaagaacgtcaacca |
52 |
Q |
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| T |
12610691 |
tcattaccaccttggaattttagaagaacgtctacca |
12610727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 5752 - 5626
Alignment:
| Q |
116 |
tgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacag |
215 |
Q |
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||||||| ||||| ||||| |||||| || ||| ||| | | ||||||| |||||||||||||||| ||| |||| ||||||||||| || ||||||| |
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| T |
5752 |
tgatgatgttttcaagtatttgatcagtttgtcgatgaagcatctcaagcttaggcctcaaaccagtaacttgttgtagccatttagcagatggaaacaa |
5653 |
T |
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| Q |
216 |
ttcaccaatgtcaaaacctcctgcaat |
242 |
Q |
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|| || | |||||||||||||||||| |
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| T |
5652 |
atctcccaagtcaaaacctcctgcaat |
5626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 62913 - 63051
Alignment:
| Q |
108 |
atgttcaatgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaa |
207 |
Q |
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||||| ||||| ||| ||||| ||||| ||||||| | ||||||||||||||| |||||||||||| | | | | ||||||||||||||| |||||| |
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| T |
62913 |
atgttgaatgacgatgttttcaagtatctgatcaagttgtctatgcaacctcttaagtttaggcctttgattaaatataagttgaagccatttggctgaa |
63012 |
T |
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| Q |
208 |
ggaaacagttcaccaatgtcaaaacctcctgcaattgat |
246 |
Q |
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| T |
63013 |
ggaaataattcaattatttcaaaacctcctccaattgat |
63051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 23146686 - 23146811
Alignment:
| Q |
116 |
tgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacag |
215 |
Q |
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||||||| ||||| | ||| |||||| || ||| ||| ||||||||||| |||||||||| ||||| |||||| || | |||||||||||| ||||||| |
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| T |
23146686 |
tgatgatgttttcaaatatctgatcagtttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccatttagctgagggaaacaa |
23146785 |
T |
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| Q |
216 |
ttcaccaatgtcaaaacctcctgcaa |
241 |
Q |
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|| || | ||||||||| ||||||| |
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| T |
23146786 |
atctcccaagtcaaaaccccctgcaa |
23146811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 23039811 - 23039909
Alignment:
| Q |
116 |
tgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaaca |
214 |
Q |
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||||||| ||||| | ||| |||||| || ||| ||| ||||||||||| |||||||||| ||||| |||||| || | |||||||||||| ||||||| |
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| T |
23039811 |
tgatgatgttttctaatatctgatcagtttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccatttagctgagggaaaca |
23039909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 23033659 - 23033743
Alignment:
| Q |
158 |
tctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaacagttcaccaatgtcaaaacctcctgcaat |
242 |
Q |
| |
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||||||| |||||||| | ||||| |||| ||||||||||||||| |||||||||| || || | || ||||||||||||||| |
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| T |
23033659 |
tctcaagcttaggcctaataccagtaacatgttgaagccatttagaagaaggaaacaaatctcccaagttaaaacctcctgcaat |
23033743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 23036934 - 23037032
Alignment:
| Q |
116 |
tgatgatattttccagtatatgatcaattcgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagctgaaggaaaca |
214 |
Q |
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||||||| ||||| | ||| |||||| || ||| ||| | |||||| || |||||||||||||||| || | | || |||||||||||||| ||||||| |
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| T |
23036934 |
tgatgatgttttctaatatctgatcagtttgtcgatgaatcctctccagcttaggcctcaaaccagtaatacgctgtagccatttagctgagggaaaca |
23037032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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