View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_53 (Length: 251)
Name: NF10041_low_53
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_53 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 13389320 - 13389561
Alignment:
| Q |
10 |
ggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagaga |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13389320 |
ggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagaga |
13389419 |
T |
|
| Q |
110 |
aagaagcaatagaacacttaggagctgattcatttctgataagtcgtgaccaagagaaaatgcaggtacnnnnnnnnttgttcaattttctattatatgg |
209 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
13389420 |
aagaagcaatagaacacttaggagccgattcatttctgataagtcgtgaccaagagaaaatgcaggtacaaaaaaaattgttcaattttctattatacag |
13389519 |
T |
|
| Q |
210 |
aaattgacaatgctattgctaatcaattcatgaactaattat |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
13389520 |
aaattgacaatgctattgctaatcaattcatgaactaattat |
13389561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 13385499 - 13385667
Alignment:
| Q |
10 |
ggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagaga |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| || || ||||||||||| | | |||||| | |
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| T |
13385499 |
ggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaa |
13385598 |
T |
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| Q |
110 |
aagaagcaatagaacacttaggagctgattcatttctgataagtcgtgaccaagagaaaatgcaggtac |
178 |
Q |
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| T |
13385599 |
aggaagcaaaagaacacttaggagctgattcatttctgataagtcgtgaccaagataaaatgcaggtac |
13385667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 13393731 - 13393895
Alignment:
| Q |
14 |
ttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaaga |
113 |
Q |
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|||||||||||||||| ||||||||| ||| |||||| ||||| ||||| ||||| || | ||||||||| ||||||||||||||||||||||||||||| |
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| T |
13393731 |
ttgttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaaga |
13393830 |
T |
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| Q |
114 |
agcaatagaacacttaggagctgattcatttctgataagtcgtgaccaagagaaaatgcaggtac |
178 |
Q |
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|||||||||| || ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |
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| T |
13393831 |
agcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtac |
13393895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 13413082 - 13412932
Alignment:
| Q |
10 |
ggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagaga |
109 |
Q |
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|||||||||||||||||||| ||||| || ||||||||||||||||||||||| || ||||| | ||| || || ||||||||||| || |||||||| | |
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| T |
13413082 |
ggtgttgttggtcttggtggacttggccatatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaagaaa |
13412983 |
T |
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| Q |
110 |
aagaagcaatagaacacttaggagctgattcatttctgataagtcgtgacc |
160 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13412982 |
aggaagcaatagaacacttaggagctgattcatttctgataagtagtgacc |
13412932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 13426315 - 13426182
Alignment:
| Q |
13 |
gttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaag |
112 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||| | ||||||||| ||||||||||| || | |||||| || | |
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| T |
13426315 |
gttgttggtcttggtggacttggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaagg |
13426216 |
T |
|
| Q |
113 |
aagcaatagaacacttaggagctgattcatttct |
146 |
Q |
| |
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|||| |||||||| ||||||||||| || ||||| |
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| T |
13426215 |
aagcgatagaacatttaggagctgactcgtttct |
13426182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 13419427 - 13419291
Alignment:
| Q |
10 |
ggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagaga |
109 |
Q |
| |
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|||||||||||||||||||| ||||| || ||||||||||||||||| ||||| || ||||| | ||| || || ||||||||||| || ||||||| | |
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| T |
13419427 |
ggtgttgttggtcttggtggacttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaa |
13419328 |
T |
|
| Q |
110 |
aagaagcaatagaacacttaggagctgattcatttct |
146 |
Q |
| |
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| ||||||||||||||||| |||||||| || ||||| |
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| T |
13419327 |
aggaagcaatagaacacttgggagctgactcgtttct |
13419291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 13373169 - 13373035
Alignment:
| Q |
10 |
ggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagaga |
109 |
Q |
| |
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||||| |||||||||||||| | ||||| ||||||||||||||| ||||||| |||||||| | |||||||||||| || || || || |||||| ||| |
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| T |
13373169 |
ggtgtggttggtcttggtggattaggtcatatggctgtgaaatttaccaaagcttttggtgctaatgtaacagtgataagcacttctcctaacaaaaaga |
13373070 |
T |
|
| Q |
110 |
aagaagcaatagaacacttaggagctgattcattt |
144 |
Q |
| |
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| ||||| || ||||||||||||||||| |||||| |
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| T |
13373069 |
aggaagccattgaacacttaggagctgactcattt |
13373035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 13453931 - 13453783
Alignment:
| Q |
10 |
ggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagaga |
109 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||| |||||||| |||||||| || ||||| | ||| || || |||||||||||||| || || || | |
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| T |
13453931 |
ggtgttgttggtcttggtggacttggccatatggccgtgaaattcgccaaagctttcggtgctaatgtgaccgtaattagtacatcacctaaaaaggaaa |
13453832 |
T |
|
| Q |
110 |
aagaagcaatagaacacttaggagctgattcatttctgataagtcgtga |
158 |
Q |
| |
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| |||||| ||||||||||| |||| || |||||||| ||||| ||||| |
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| T |
13453831 |
aggaagcattagaacacttacgagcggactcatttctaataagccgtga |
13453783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 13446975 - 13446854
Alignment:
| Q |
13 |
gttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaag |
112 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||| | || || || |||||||| || || || || || || | |
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| T |
13446975 |
gttgttggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgaccgtaattagtacgtcgcctaaaaaggaaaagg |
13446876 |
T |
|
| Q |
113 |
aagcaatagaacacttaggagc |
134 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
13446875 |
aagcaatagaacacttaggagc |
13446854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 13378965 - 13378832
Alignment:
| Q |
10 |
ggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagaga |
109 |
Q |
| |
|
||||| |||||||||||||| | ||||| ||||||||||| || |||||||| ||||||| | ||||| ||| | ||||| || || |||||| ||| |
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| T |
13378965 |
ggtgtggttggtcttggtggattaggtcatatggctgtgaagttcgccaaagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaaga |
13378866 |
T |
|
| Q |
110 |
aagaagcaatagaacacttaggagctgattcatt |
143 |
Q |
| |
|
| ||||| || |||| |||||||||||| ||||| |
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| T |
13378865 |
aggaagccattgaacgcttaggagctgactcatt |
13378832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 47601249 - 47601086
Alignment:
| Q |
10 |
ggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagaga |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| || ||||| ||||| ||||| || | ||| || || |||||||||||||| |||||||| | |
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| T |
47601249 |
ggtgttgttggtcttggtggacttggtcacatggctgttaagtttgctaaagcttttggggctaatgtgactgtaattagtacatcacctaacaaagaaa |
47601150 |
T |
|
| Q |
110 |
aagaagcaatagaacacttaggagctgattcatttctgataagtcgtgaccaagagaaaatgca |
173 |
Q |
| |
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||||||||| |||| |||||||||||| |||||| ||||||||||||||||||| || ||||| |
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| T |
47601149 |
aagaagcaagagaatgcttaggagctgactcatttttgataagtcgtgaccaagataagatgca |
47601086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 28430703 - 28430870
Alignment:
| Q |
10 |
ggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagaga |
109 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| | |||||||||||||| || || || |||||| ||| |
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| T |
28430703 |
ggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaaga |
28430802 |
T |
|
| Q |
110 |
aagaagcaatagaacacttaggagctgattcatttctgataagtcgtgaccaagagaaaatgcaggta |
177 |
Q |
| |
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| ||||| || |||| | |||||||| |||||| || | || |||| ||||| ||||||||||| |
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| T |
28430803 |
aggaagctattgaacttcttggagctgactcatttgtggttagcagtgaacaagatcaaatgcaggta |
28430870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 8354107 - 8354168
Alignment:
| Q |
8 |
ttggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggt |
69 |
Q |
| |
|
|||||||||||||| | || || ||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
8354107 |
ttggtgttgttggtttgggaggacttggtcacatggctgtaaaatttggtaaagcatttggt |
8354168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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