View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_54 (Length: 250)
Name: NF10041_low_54
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 15885359 - 15885450
Alignment:
| Q |
1 |
aatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagtataataaaacccttcaagtataatttagatgaatg |
92 |
Q |
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| T |
15885359 |
aatgaaaaagatatatgcttaactgacaacaacatcaaggctgtactcctagtaaggataataaaccccttgaagtataatttagatgaatg |
15885450 |
T |
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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 12637693 - 12637632
Alignment:
| Q |
3 |
tgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagtataataa |
64 |
Q |
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| T |
12637693 |
tgaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataa |
12637632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 12610682 - 12610619
Alignment:
| Q |
8 |
aagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagtataataaaaccctt |
71 |
Q |
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|||||||||| |||||||| ||||| |||||| || ||||||||||||| |||||||| ||||| |
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| T |
12610682 |
aagatatatgtttaactgataacaatatcaagtctataatcctggtaaggataataaacccctt |
12610619 |
T |
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