View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_56 (Length: 250)
Name: NF10041_low_56
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4923823 - 4923584
Alignment:
| Q |
1 |
ctgtcaaaattccgtggaaggcatactctggtgccatgaaaccatacgtacctgcaaaatatttagtctaacttctaagattatctgcagccaacttata |
100 |
Q |
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| T |
4923823 |
ctgtcaaaattccgtggaaggcatactctggtgccatgaaaccatacgtacctgcaaaatatttagtctaacttctaagattatctccagccaacttata |
4923724 |
T |
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| Q |
101 |
aaaatatggtcatgctaacatgtgtccttatgatatatgttaaagtttccatacaaaataaatatttattgtgtaaatttaaatttcaatcttttgtgta |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4923723 |
aaaatatgatcatgctaacatgtgtccttatgatatatgttaaagtttccatacaaaataaatatttattgtgtaaaattaaatttcaatcttttgtgta |
4923624 |
T |
|
| Q |
201 |
ttaaatttgtacaatttctaagatataactttcatctgtg |
240 |
Q |
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| T |
4923623 |
ttaaatttgtacaatttctaagatataattttcatctgtg |
4923584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 4023018 - 4022907
Alignment:
| Q |
118 |
acatgtgtccttatgatatatgttaaagtttccatacaaaataaa-tatttattgtgtaaatttaaatttcaatcttttgtgtattaaatttgtacaatt |
216 |
Q |
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||||||| |||| |||| ||| |||||||| |||| |||| || ||||||||| ||| |||||||||||||||||||| |||| ||| | |||||| |
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| T |
4023018 |
acatgtgcgcttaagatacatgataaagttttcataaaaaaacaagtatttattgaagaaaattaaatttcaatcttttgtgaattatattggcacaatt |
4022919 |
T |
|
| Q |
217 |
tctaagatataa |
228 |
Q |
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||||| |||||| |
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| T |
4022918 |
tctaatatataa |
4022907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 26241296 - 26241427
Alignment:
| Q |
108 |
ggtcatgctaacatgtgtccttatgatatatgttaaagtttccatacaaaataaatatttattgtgtaaatttaaatttcaatcttttgtgt--attaaa |
205 |
Q |
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| T |
26241296 |
ggtcatgctaacatgtgcccttatgacacatgttaaggtttccacaaaaagcaaatatttatcgtgcaaaattaaatttcaatcttttttgtaaattaaa |
26241395 |
T |
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| Q |
206 |
tttgtacaatttctaagatataactttcatct |
237 |
Q |
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|||| ||||||| || |||||| |||||||| |
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| T |
26241396 |
tttgcacaattttcaatatataattttcatct |
26241427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 3676117 - 3676044
Alignment:
| Q |
137 |
atgttaaagtttccatacaaaat-aaatatttattgtgtaaatttaaatttcaatcttttgtgtattaaatttg |
209 |
Q |
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||||||| |||| |||| ||||| |||||||||||||| ||| |||||||||||||||||||| | |||||||| |
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| T |
3676117 |
atgttaaggttttcataaaaaattaaatatttattgtgcaaaattaaatttcaatcttttgtgaactaaatttg |
3676044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 39710513 - 39710570
Alignment:
| Q |
180 |
taaatttcaatcttttgtgtattaaatttgtacaatttctaagatataactttcatct |
237 |
Q |
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|
| T |
39710513 |
taaatttcaatcttttatgtattagatttgcacaatttttaagatataatttccatct |
39710570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 37968246 - 37968307
Alignment:
| Q |
135 |
atatgttaaagtttccatacaaaataaatatttattgtgtaaatttaaatttcaatcttttg |
196 |
Q |
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||||||||| |||| |||| ||| |||||||||||||||||| |||||||||||||||||| |
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| T |
37968246 |
atatgttaaggttttcataaaaatcaaatatttattgtgtaaaattaaatttcaatcttttg |
37968307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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