View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_6 (Length: 483)
Name: NF10041_low_6
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 14 - 477
Target Start/End: Original strand, 16007573 - 16008036
Alignment:
| Q |
14 |
caagaaagacaagttgcatcgcattagatgaatccaagcttctggtcatatcaggaaatcatttttattccaatcaaacctttaatatttgcgacagttg |
113 |
Q |
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| T |
16007573 |
caagaaagacaagttgcatcgcattagatgaatccaagcttctggtcatatcaggaaatcatttttattccaatcaaacctttaatatttgcgacagttg |
16007672 |
T |
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| Q |
114 |
atacatttatcgaagtattttggtaaacataaacaagagccgctgaactacaaaaattactgtgttatgtaa-tttctcagtggtgtctacatataaaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16007673 |
atacatttatcgaagtattttggtaaacataaacaagagctgctgaactacaaaaatttctgtgttatgtaattttctcagtggtgtctacatataaaga |
16007772 |
T |
|
| Q |
213 |
tcgtttagtaagttcgattttcgccaacaaaacaacaagctcaaaacatggaaccagttaccgatatgaattgcaaaagatatgttctttaagatgagga |
312 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16007773 |
tcatttagtaagtacgattttcgccaacaaaacaacaagctcaaaacatggaaccagttaccgatatgaattgcaaaagatatgttctttaagatgagga |
16007872 |
T |
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| Q |
313 |
attcatagaatgttctttatacttggatcatgtgctttttctcatggcaataaaatctatatgaaaaatgctcttaagtgtagtgcaagctttgaaacta |
412 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16007873 |
attcatagaatgttctttatacttggatcatgtg-tttttctcatggcaataaaatctatatgaaaaatgctcttaagtgtagtgcaagctttgaaacta |
16007971 |
T |
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| Q |
413 |
gatctcataattgactcgagtctctgccaaatacgaatcgccttccccaatcggataccaccaaa |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16007972 |
gatctcataattgactcgagtctctgccaaatacgaatcgccttccccaatcagataccaccaaa |
16008036 |
T |
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