View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_61 (Length: 249)
Name: NF10041_low_61
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_61 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 35150075 - 35150319
Alignment:
| Q |
1 |
ccttgtaacaacatcacattttcggttgtttggctaaatggagagaaacataaggcttcatcaagttagttgatggtgtgttggatggttatagacaaga |
100 |
Q |
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| T |
35150075 |
ccttgtaacaacatcacattttcagttgtttggctaaatggagagaaacataaggcttcatcaaattagttgatggtgtgttggagggttatagacaaga |
35150174 |
T |
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| Q |
101 |
tggtatgagttatggaggatataatttt---gagaagacaaaaatgtgggtcctaacatcaaacaatgcctttgtaaggttgtagatggacataatatca |
197 |
Q |
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| T |
35150175 |
tggtatgagttatggaggatataattttgaggagaagacaaaaatgtgggtcctaacatcaaaaaatgcctttgtaaggttgtagatggacataatatca |
35150274 |
T |
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| Q |
198 |
ttcaaaatattatctgactattattctttaatttgttctctgcta |
242 |
Q |
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| T |
35150275 |
ttcaaaatattatctgactattattctttaatttgttctatgcta |
35150319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 35128044 - 35128080
Alignment:
| Q |
62 |
caagttagttgatggtgtgttggatggttatagacaa |
98 |
Q |
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| T |
35128044 |
caagttagttaatggcgtgttggatggttatagacaa |
35128080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 17024 - 17081
Alignment:
| Q |
132 |
aagacaaaaatgtgggtcctaacatcaaacaatgcctttgtaaggttgtagatggaca |
189 |
Q |
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| T |
17024 |
aagacaaaaagatgggtcctaacattaaacaatgccttcgtaagattgttgatggaca |
17081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 19283642 - 19283585
Alignment:
| Q |
132 |
aagacaaaaatgtgggtcctaacatcaaacaatgcctttgtaaggttgtagatggaca |
189 |
Q |
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| T |
19283642 |
aagacaaaaagatgggtcctaatatcaaacaatgtcttcgtaaggttgttgatggaca |
19283585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 49392 - 49348
Alignment:
| Q |
1 |
ccttgtaacaacatcacattttcggttgtttggctaaatggagag |
45 |
Q |
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| T |
49392 |
ccttgcaacaatatcacatttttggttgcttggctaaatggagag |
49348 |
T |
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