View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_64 (Length: 246)
Name: NF10041_low_64
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8705350 - 8705589
Alignment:
| Q |
1 |
gttaggggtagcaataatattattgggattaagaagactcttgtttactacaatggtcgtgttcctggtgttaaaagcagctgggtgattcatgaatatc |
100 |
Q |
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| T |
8705350 |
gttaggggtagcaataatattattgggattaagaagactcttgtttactacaatggtcgtgttcctggtgttaaaagcagctgggtgattcatgaatatc |
8705449 |
T |
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| Q |
101 |
atgataccacctttgaagatgacaaggtttgttttgttacattaaaggctttaaatgagtttatttgagtttttatttattcatttaaatgagtatgaca |
200 |
Q |
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| T |
8705450 |
atgataccacctttgaagatgacaaggtttgttttgttacaataaaggctttaaatgagtttatttgagtttttatttatttatttaaatgagtatgaca |
8705549 |
T |
|
| Q |
201 |
aaacatgagtttatccaggatttaataattttcctctctg |
240 |
Q |
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| T |
8705550 |
aaacatgagtttatccaggatttaataattttcctctctg |
8705589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 14372377 - 14372181
Alignment:
| Q |
1 |
gttaggggtagcaataatattattgggattaagaagactcttgtttactacaatggtcgtgttcctggtgttaaaagcagctgggtgattcatgaatatc |
100 |
Q |
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| T |
14372377 |
gttaggggtagcaataatattattgggattaagaaaactcttgtttactataatggtcgtgttcctggtgttaaaagcagccgggtgattcatgaatatc |
14372278 |
T |
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| Q |
101 |
atgataccacctttgaagatgacaaggtttgttttgttacattaaaggctttaaatgagtttatttgagtttttatttattcatttaaatgagtatga |
198 |
Q |
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| T |
14372277 |
atgataccacctttgaagat-accaggtttgttttgttacaataaaggttttaaatgagtttatttgagttattatttatttatttaaatgagtatga |
14372181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 8691089 - 8691210
Alignment:
| Q |
20 |
ttattgggattaagaagactcttgtttactacaatggtcgtgttcctggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaaga |
119 |
Q |
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|||||||||| || || || ||||| | ||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||||| | || |
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| T |
8691089 |
ttattgggataaaaaaaacacttgtgttctataatggttgtgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatga |
8691188 |
T |
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| Q |
120 |
tgacaaggtttgttttgttaca |
141 |
Q |
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| T |
8691189 |
taaccaggtttgttttgttaca |
8691210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 145
Target Start/End: Original strand, 8723786 - 8723929
Alignment:
| Q |
2 |
ttaggggtagcaataatattattgggattaagaagactcttgtttactacaatggtcgtgttcctggtgttaaaagcagctgggtgattcatgaatatca |
101 |
Q |
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||||||||| |||| | ||||||||||||||||||||||||||||| | | || ||||||||||||||| | || ||| | |||||||| ||||| |
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| T |
8723786 |
ttaggggtaccaatgaagttattgggattaagaagactcttgtttaccatgagaatcatgttcctggtgttaagaccaattggatcattcatgagtatca |
8723885 |
T |
|
| Q |
102 |
tgataccacctttgaagatgacaaggtttgttttgttacattaa |
145 |
Q |
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| T |
8723886 |
tgatgtcaccttagaggattcccaggtttgttttgttacattaa |
8723929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 8740427 - 8740563
Alignment:
| Q |
2 |
ttaggggtagcaataatattattgggattaagaagactcttgtttactacaatggtcgtgttcctggtgttaaaagcagctgggtgattcatgaatatca |
101 |
Q |
| |
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|||| |||| |||||| |||||||||| |||||||||||||||||| | | | || ||||||||||||||| | | ||| | |||||||||||||| |
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| T |
8740427 |
ttagaggtaccaataaaattattgggactaagaagactcttgtttatcatgaagatcctgttcctggtgttaagactaattggatcattcatgaatatca |
8740526 |
T |
|
| Q |
102 |
tgataccacctttgaagatgacaaggtttgttttgtt |
138 |
Q |
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| T |
8740527 |
tgatgccatctttgatgatcaccaggtttgttatgtt |
8740563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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