View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10041_low_66 (Length: 244)

Name: NF10041_low_66
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10041_low_66
NF10041_low_66
[»] chr3 (1 HSPs)
chr3 (11-226)||(30261896-30262111)
[»] chr4 (2 HSPs)
chr4 (111-217)||(8458092-8458198)
chr4 (77-134)||(35594501-35594558)
[»] chr7 (1 HSPs)
chr7 (141-213)||(35674427-35674499)
[»] chr8 (1 HSPs)
chr8 (141-226)||(37222168-37222255)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 30261896 - 30262111
Alignment:
Q  11 cagagacagaaaatgataccagagttccaagaactcctagactagagcaatgttgctccaaaccagagagaaattctctcctaactgactcttcacaaac 110  Q
    |||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  30261896 cagaaacagaaaatgataccagagttctaagaactcctagaccagagcaatgttgctccaaaccagagagaaattctctcctaacggactcttaacaaac 30261995  T
Q  111 tttctgaataactttgccactcccttgtcatctcttgtataacagaaattccataaattcagggcatattctaactgaatcttaatccctctattcagct 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30261996 tttctgaataactttgccactcccttgccatctcttgtataacagaaattccataaattcagggcatattctaactgaatcgtaatccctctattcagct 30262095  T
Q  211 tggttatcgggcttag 226  Q
    ||||||| ||||||||    
T  30262096 tggttattgggcttag 30262111  T

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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 8458198 - 8458092
Alignment:
Q  111 tttctgaataactttgccactcccttgtcatctcttgtataacagaaattccataaattcagggcatattctaactgaatcttaatccctctattcagct 210  Q
    ||||||||||||||| |||  |||||  | |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  8458198 tttctgaataacttttccatgcccttaccctctcttttataacagaaattccttaaattcagggcatattctaactgaatcttattccctccattcagct 8458099  T
Q  211 tggttat 217  Q
    |||||||    
T  8458098 tggttat 8458092  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 35594558 - 35594501
Alignment:
Q  77 agagaaattctctcctaactgactcttcacaaactttctgaataactttgccactccc 134  Q
    |||||||||||||||||||||| |||| ||||||||| |||||||  |||||||||||    
T  35594558 agagaaattctctcctaactgattcttaacaaactttttgaataatgttgccactccc 35594501  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 35674499 - 35674427
Alignment:
Q  141 tctcttgtataacagaaattccataaattcagggcatattctaactgaatcttaatccctctattcagcttgg 213  Q
    |||||| ||||||||| ||| | |||| ||||||  ||||||||| || ||||| ||||||||||||||||||    
T  35674499 tctcttttataacagagatttcttaaaatcagggattattctaacagactcttattccctctattcagcttgg 35674427  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 37222168 - 37222255
Alignment:
Q  141 tctcttgtataacagaaa--ttccataaattcagggcatattctaactgaatcttaatccctctattcagcttggttatcgggcttag 226  Q
    |||||| |||||||||||  |||| |||| ||| |  ||||||||||||| ||||| |||||||||| || || ||||| ||||||||    
T  37222168 tctcttttataacagaaaagttccctaaaatcatgaaatattctaactgactcttattccctctattaaggttagttattgggcttag 37222255  T

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