View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10041_low_67 (Length: 242)
Name: NF10041_low_67
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_67 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 36788991 - 36788778
Alignment:
| Q |
19 |
accagcagccagtaccttcttaaagagaaaaataattgacataccataacataaccatttccnnnnnnnatt-aattctgtgataataacaagtcacgtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
36788991 |
accagcagccagtaccttcttaaagagaaaaataattgacataccataacataaccatttcctttttttttttaattctgtgataataacaagtcacgtg |
36788892 |
T |
|
| Q |
118 |
ttttctcatcaatattacattctataagtatcaataatcagtattcccctccttattaccattcaaggttcaaaatggttactatgtttggtggagcttc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36788891 |
ttttctcatcaatattacattctataagtatcaataatcagtattcccctccttattaccattcaaggttcaaaatggtaactatgtttggtggagcttc |
36788792 |
T |
|
| Q |
218 |
aatagtcctatgct |
231 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
36788791 |
aatagttctatgct |
36788778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University