View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_69 (Length: 242)
Name: NF10041_low_69
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 42620945 - 42621170
Alignment:
| Q |
18 |
tttacaccggcacacgccgcttctgcacaaccacaccaatacgtcacgccgtcgaccccacaaacagggtccgtccggaaacacttcacagggcaccatg |
117 |
Q |
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| T |
42620945 |
tttacaccggcacacgccgcttctgcacaaccacaccaatacgtcacgccgtcgaccccacaaacagggtccgtccggaaacacttcacagggcaccatg |
42621044 |
T |
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| Q |
118 |
acgacgccaccgcaccagcgcacacgttcttcccttctgcggttactttcgacggtaaacgtatcaccgacgacgatg---------acgatgacgacga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
42621045 |
acgacgccaccgcaccagcgcacacgttcttcccttctgcggttactttcgacggtaaacgtatcaccgacgacgacgacgatgacaacgatgacgacga |
42621144 |
T |
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| Q |
209 |
catgtcatctgccaccaccaacacca |
234 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42621145 |
catgtcatctgccaccaccaacacca |
42621170 |
T |
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