View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10041_low_76 (Length: 238)

Name: NF10041_low_76
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10041_low_76
NF10041_low_76
[»] chr5 (7 HSPs)
chr5 (1-223)||(13389629-13389851)
chr5 (17-145)||(13385819-13385947)
chr5 (176-223)||(13386016-13386063)
chr5 (1-58)||(13425953-13426010)
chr5 (7-72)||(13453454-13453519)
chr5 (5-72)||(13394031-13394098)
chr5 (22-58)||(13419063-13419099)
[»] chr4 (2 HSPs)
chr4 (13-113)||(47600828-47600928)
chr4 (127-178)||(47600744-47600795)
[»] chr8 (1 HSPs)
chr8 (25-110)||(28431228-28431313)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13389629 - 13389851
Alignment:
Q  1 cctatcttacccctaattggattattgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctttggagatccccgtctttcctttaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13389629 cctatcttacccctaattggattattgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctttggagatccccgtctttcctttaattt 13389728  T
Q  101 tgggtaagctagcataaatatgaactacatttccattgatctcttgtttgatttgaagcaaaaataaaattcatatatgaataagcattttgatgatgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13389729 tgggtaagctagcataaatatgaactacatttccattgatctcttgtttgatttgaagcaaaaataaaattcatatatgaataagcattttgatgatgct 13389828  T
Q  201 aacattcattggcagggagaaag 223  Q
    |||||||||||||||||||||||    
T  13389829 aacattcattggcagggagaaag 13389851  T

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Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 13385819 - 13385947
Alignment:
Q  17 ttggattattgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctttggagatccccgtctttcctttaattttgggtaagctagcata 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13385819 ttggattactgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctctggagatccccgtctttcctttaattttgggtaagctagcata 13385918  T
Q  117 aatatgaactacatttccattgatctctt 145  Q
     ||||||||||  ||||||| ||||||||    
T  13385919 tatatgaactatgtttccatagatctctt 13385947  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 13386016 - 13386063
Alignment:
Q  176 tatgaataagcattttgatgatgctaacattcattggcagggagaaag 223  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||||    
T  13386016 tatgaataagcatttttatgatgctaacaattattggcagggagaaag 13386063  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13426010 - 13425953
Alignment:
Q  1 cctatcttacccctaattggattattgaagtctcatggaaaacttgtaatggttggtg 58  Q
    |||||||||||  | ||||| |||||||| ||| ||||||||||||||||||||||||    
T  13426010 cctatcttaccattgattggtttattgaaatctaatggaaaacttgtaatggttggtg 13425953  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 13453519 - 13453454
Alignment:
Q  7 ttacccctaattggattattgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcct 72  Q
    ||||| || ||||| ||| | |||||||||||||| |||||||||||||||| |||||| ||||||    
T  13453519 ttacctctgattggtttactcaagtctcatggaaagcttgtaatggttggtgcacctgaaaagcct 13453454  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 13394031 - 13394098
Alignment:
Q  5 tcttacccctaattggattattgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcct 72  Q
    ||||||| ||| |||| ||||| || | ||| ||||||||||||||||| |||| |||||||||||||    
T  13394031 tcttacctctagttggtttattaaaatatcacggaaaacttgtaatggtcggtgcacctgacaagcct 13394098  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 13419099 - 13419063
Alignment:
Q  22 ttattgaagtctcatggaaaacttgtaatggttggtg 58  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  13419099 ttattgaaatctaatggaaaacttgtaatggttggtg 13419063  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 47600928 - 47600828
Alignment:
Q  13 ctaattggattattgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctttggagatccccgtctttcctttaattttgggtaagctag 112  Q
    |||||||||||| |||||||||||||||||||||||||||||||||  || |  |||||| ||||| |||| |||||| ||||  ||| ||||||| |||    
T  47600928 ctaattggattactgaagtctcatggaaaacttgtaatggttggtgctccagcgaagcctctggagctccctgtctttactttgctttcgggtaagttag 47600829  T
Q  113 c 113  Q
    |    
T  47600828 c 47600828  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 47600795 - 47600744
Alignment:
Q  127 acatttccattgatctcttgtttgatttgaagcaaaaataaaattcatatat 178  Q
    |||| ||||| |||||||||||||||||||||||| || ||||| |||||||    
T  47600795 acatgtccatagatctcttgtttgatttgaagcaataacaaaatgcatatat 47600744  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 28431228 - 28431313
Alignment:
Q  25 ttgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctttggagatccccgtctttcctttaattttgggtaagct 110  Q
    ||||| ||||||||||||||||| |||||||||| |||||| |||||| ||||| | || || ||||||||| || ||||||||||    
T  28431228 ttgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagct 28431313  T

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