View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_8 (Length: 479)
Name: NF10041_low_8
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 193 - 466
Target Start/End: Complemental strand, 8880470 - 8880198
Alignment:
| Q |
193 |
ttgttagacaatgatttgtgtttggaagggaattctcatattctgcttattattaatgttaacttttagcttatgttctgcagctaacaaactcatagtt |
292 |
Q |
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| T |
8880470 |
ttgttagacaatgatttgtgtttggaagggaattctcatattctgcttattattaatgttaacttt-agcttgtgttctgcagctaacaaacttatagtt |
8880372 |
T |
|
| Q |
293 |
ggatttattccgcagttatacatcctatgcaggtttatttccattgttgtcaagtgggctactgccattactcgaggttgaagaattatctcagactatt |
392 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8880371 |
ggatttattccgcaggtatacatcctatgcaggtttatttccattgttgtcaagcgggctactgccattactcgaggttgaagaattatctcagactatt |
8880272 |
T |
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| Q |
393 |
gattctgaaagtttaagtgtccaaaactccgttctgtttgctggtccattgactaccacctccattagtaccaa |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8880271 |
gattctgaaagtttaagtgtccaaaactccgttctgttagctggtccattgactaccacctccattagtaccaa |
8880198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 8880644 - 8880538
Alignment:
| Q |
19 |
attagtcagcttgaggctaagaatccaacccccgcttccactgatgctttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttact |
118 |
Q |
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| T |
8880644 |
attagtcagctcgaggctaagaatccaacccccgcttccactgatgctttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttact |
8880545 |
T |
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| Q |
119 |
aactttc |
125 |
Q |
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||||||| |
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| T |
8880544 |
aactttc |
8880538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 309 - 466
Target Start/End: Complemental strand, 8884155 - 8883998
Alignment:
| Q |
309 |
tatacatcctatgcaggtttatttccattgttgtcaagtgggctactgccattactcgaggttgaagaattatctcagactattgattctgaaagtttaa |
408 |
Q |
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| T |
8884155 |
tatacatcctttgccggtttatttccattgctttcgagcggactactgccattacttacggttgaagaaatatctcagactattgactctgaaagtttga |
8884056 |
T |
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| Q |
409 |
gtgtccaaaactccgttctgtttgctggtccattgactaccacctccattagtaccaa |
466 |
Q |
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| T |
8884055 |
ctgtccaaaactctgttctgtttgctggtccattgactaccacctccattagtaccaa |
8883998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 8884746 - 8884662
Alignment:
| Q |
19 |
attagtcagcttgaggctaagaatccaacccccgcttccactgatgctttgagtttgctcgatggaaaatggattcttgcgtaag |
103 |
Q |
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|||| |||||| || ||||||||||| || || |||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
8884746 |
attactcagctggaagctaagaatcccacacctgcttccactgatgccttgagtttgctcaatggaaaatggattcttgcgtaag |
8884662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 193 - 399
Target Start/End: Complemental strand, 45073611 - 45073406
Alignment:
| Q |
193 |
ttgttagacaatgatttgtgtttggaagggaa-ttctcatattctgcttattattaatgttaacttttagcttatgttctgcagctaacaaactcatagt |
291 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||| |||||||||||||| | |||||||| || || ||||||||||||||||||||||| || |
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| T |
45073611 |
ttgttagacaatgatttgtgtttggaagggaacttatcatgttctgcttattattgacgttaactt--agtttgtgttctgcagctaacaaactcatggt |
45073514 |
T |
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| Q |
292 |
tggatttattccgcagttatacatcctatgcaggtttatttccattgttgtcaagtgggctactgccattactcgaggttgaagaattatctcagactat |
391 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| || |
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| T |
45073513 |
tggatttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatctcagacaat |
45073414 |
T |
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| Q |
392 |
tgattctg |
399 |
Q |
| |
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|||||||| |
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| T |
45073413 |
tgattctg |
45073406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 45073783 - 45073677
Alignment:
| Q |
19 |
attagtcagcttgaggctaagaatccaacccccgcttccactgatgctttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttact |
118 |
Q |
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||||||||||| ||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45073783 |
attagtcagctcgaggctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgttttact |
45073684 |
T |
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| Q |
119 |
aactttc |
125 |
Q |
| |
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||||||| |
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| T |
45073683 |
aactttc |
45073677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 423 - 458
Target Start/End: Complemental strand, 45073406 - 45073371
Alignment:
| Q |
423 |
gttctgtttgctggtccattgactaccacctccatt |
458 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
45073406 |
gttctgtttgctggtccattgactaccacctccatt |
45073371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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