View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_81 (Length: 230)
Name: NF10041_low_81
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_81 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 35149669 - 35149892
Alignment:
| Q |
7 |
gcgcaatgaatgtttggaaaatgtacgagttttcatgccatgagtaacgcatgtcatcatcctgatggtctagttcatgttagggacaagggaggtcagg |
106 |
Q |
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| T |
35149669 |
gcgcaatgaatgtttggaaaatgtatgagttttcatgccatgagtaacgcatgtcatcatcctgatggtctagttcatgttagggacaagggaggtcagg |
35149768 |
T |
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| Q |
107 |
agctacatcctacatattttaaaaatagggattaaaaagaccccgatgacatgcgtgtaaaagagggattgattttagattctaggttgttagagaacgt |
206 |
Q |
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| T |
35149769 |
agctacatcctacatattttaaaaatagggattaaaaagaccctgatgacatgcgtgtaaaaaagggattgattttagatactaggttgttagagaatgt |
35149868 |
T |
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| Q |
207 |
ccttcaaacacctatcatcactat |
230 |
Q |
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| T |
35149869 |
ccttcaaacacctatcatcactat |
35149892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 35127665 - 35127889
Alignment:
| Q |
7 |
gcgcaatgaatgtttggaaaatgtacgagttttcatgccatgagtaacgcatgtcatcatcctgatggtctagttcatgtta-----gggacaagggagg |
101 |
Q |
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| T |
35127665 |
gcgcaatgtatgtttggaaagttt--gagttttcatgtcatgagtcacacatgtcatcatcatgatggtttggtttgtgttattgttggggcaggggagg |
35127762 |
T |
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| Q |
102 |
tcaggagctacatcctacatattttaaaaatagggattaaaaagaccccgatgacatgcgtgtaaaagagggattgattttagattctaggttgttagag |
201 |
Q |
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| T |
35127763 |
tcaggagctacatcgtacaaattttaaaaccatctag--aaaagaccatgatgacatgcatgtaaaagagggattggtcttagatgctaggttgttagat |
35127860 |
T |
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| Q |
202 |
aacgtccttcaaacacctatcatcactat |
230 |
Q |
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| T |
35127861 |
aaagtccttcaaacacctatcatcactat |
35127889 |
T |
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