View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_83 (Length: 229)
Name: NF10041_low_83
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_83 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 4923870 - 4924089
Alignment:
| Q |
6 |
ttcattgataataagatggagatgttgtatgagagattcccagctgacgaaattattgatcccattctcatgagattgatagcgccgcaatgtttggcag |
105 |
Q |
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| T |
4923870 |
ttcattgataataagatggagatgttgtatgagaggttcccagctgacgaaattattgatcccattctcatgagattgatagcgccgcaatgtttggcag |
4923969 |
T |
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| Q |
106 |
tgtttatgaatatcatgaaaagatgcttgaatatagaagaaccaaatgaaagaccaacaatgggcgaggttgaggttgaacttgagcatgctctggcact |
205 |
Q |
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| T |
4923970 |
tgtttatgaatatcatgaaaagatgcttgaatagtggagaaccaaatgaaagaccaacaatgggtgaggttgaggttgaacttgagcatgctttggcact |
4924069 |
T |
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| Q |
206 |
gcaggaggaagcagatcgtg |
225 |
Q |
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| T |
4924070 |
gcaggaggaagcagatcgtg |
4924089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 4929235 - 4929425
Alignment:
| Q |
36 |
gagagattcccagctgacgaaattattgatcccattctcatgagattgatagcgccgcaatgtttggcagtgtttatgaatatcatgaaaagatgcttga |
135 |
Q |
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| T |
4929235 |
gagaggttcccagctgatgaaattattgatccaattctcacgagattgatttcaccggaatgtttggcagtgttcgtcaatatcatgaaaagatgcttga |
4929334 |
T |
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| Q |
136 |
atatagaagaaccaaatgaaagaccaacaatgggcgaggttgaggttgaacttgagcatgctctggcactgcaggaggaagcagatcgtga |
226 |
Q |
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| T |
4929335 |
atagagaagaaccaaatgaaagaccttcaatgggtgaggttgaggttgaacttgagcatgctctagcactgcaggaggaagcagagcgtga |
4929425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 4903341 - 4903159
Alignment:
| Q |
36 |
gagagattcccagctgacgaaattattgatcccattctcatgagattgatagcgccgcaatgtttggcagtgtttatgaatatcatgaaaagatgcttga |
135 |
Q |
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||||| ||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
4903341 |
gagaggttccctgctgataagattattgatcccattctcatgagattaatagcgccgcaatgtttggcagtgttcatggatatcatgaaaagatgcttga |
4903242 |
T |
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| Q |
136 |
atatagaagaaccaaatgaaagaccaacaatgggcgaggttgaggttgaacttgagcatgctctggcactgcaggaggaagcagat |
221 |
Q |
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| T |
4903241 |
atat---agaaccaaatgaaagaccagctatgggtgaggttgaggtcgaacttgagcatgctctagcactgcaggaggaagcagat |
4903159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 4906718 - 4906536
Alignment:
| Q |
36 |
gagagattcccagctgacgaaattattgatcccattctcatgagattgatagcgccgcaatgtttggcagtgtttatgaatatcatgaaaagatgcttga |
135 |
Q |
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| T |
4906718 |
gagaggttcccagctaatgagattattgatcccattctcatgagattgattgcgccgcaatgtttggaagtgttcatggatatcatgaaaagatgcttga |
4906619 |
T |
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| Q |
136 |
atatagaagaaccaaatgaaagaccaacaatgggcgaggttgaggttgaacttgagcatgctctggcactgcaggaggaagcagat |
221 |
Q |
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| T |
4906618 |
atat---agaaccaaatgaaagaccagctatgggtgaggttgaggtcgaacttgagcatgctctggaactgcaggaggaagcagat |
4906536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 5822943 - 5823104
Alignment:
| Q |
57 |
attattgatcccattctcatgagattgatagcgccgcaatgtttggcagtgtttatgaatatcatgaaaagatgcttgaatatagaagaaccaaatgaaa |
156 |
Q |
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| T |
5822943 |
attattgatcccattctcatgagattgattgcgccgtggtgtttgaaggtgttcatggatgtcatgaaaaaatgcttgaatatagac---ccaaacgaaa |
5823039 |
T |
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| Q |
157 |
gaccaacaatgggcgaggttgaggttgaacttgagcatgctctggcactgcaggaggaagcagat |
221 |
Q |
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| T |
5823040 |
gaccagcaatgggcgaggttgaggttgaactcgagcatgctctagcactgcaggaggaaacagat |
5823104 |
T |
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