View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_9 (Length: 458)
Name: NF10041_low_9
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Original strand, 50465027 - 50465450
Alignment:
| Q |
16 |
catattataagtgaaatatttgtggttggaatagagagactaagaaaattttgctagtagtagcttatatgaaccgaagaaaagaaggtgaattcttgtg |
115 |
Q |
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| T |
50465027 |
catattataagtgaaatatttgtggttggaatagagagactaagaaaattttgctagtagtagcttatatgaaccgaagaaaagaaggtgaattcttgtg |
50465126 |
T |
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| Q |
116 |
atgtttttaaagagggaacggttgcatcacgcatactgtatctatttattagaaaaggatggttttgagatctnnnnnnnctaggctctgtatttattaa |
215 |
Q |
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| T |
50465127 |
atgtttttaaagagggaacggttgcatcacgcatactgtatctatttattagaaaaggatggttttgagatctaaaaaaactaggctctgtatttattag |
50465226 |
T |
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| Q |
216 |
gaacttctttttattgtttttacctcatatactatatatccctgtcacattcaataaataacccgtcatttggatagagggagagataccatatgatatt |
315 |
Q |
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| T |
50465227 |
gaacttctttttattgtttttacctcatatactatatatccctgtcacattcaataaataacccgtcatttggatagagggagagataccatatgatatt |
50465326 |
T |
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| Q |
316 |
tctgcttttcacccaataatttatatgtaaagannnnnnnnnnacggttaattaacccattaaatcattaatcacatttaactttaatcataattacttc |
415 |
Q |
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| T |
50465327 |
tctgcttttcacccaataatttatatgtaaagattttttttttacggttaattaacccgttaaatcattaatcacatttaactttaatattaattacttc |
50465426 |
T |
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| Q |
416 |
taaaagtcacatgtatgattagtt |
439 |
Q |
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| T |
50465427 |
taaaaatcacgtgtatgattagtt |
50465450 |
T |
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Back To:
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 26491773 - 26491837
Alignment:
| Q |
369 |
aacccattaaatcattaatcacatttaactttaatcataattacttctaaaagtcacatgtatgatt |
435 |
Q |
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| T |
26491773 |
aaccctttaaattattaatcacatttaaattttatcataatcacttctcaa--tcacatgtatgatt |
26491837 |
T |
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