View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10041_low_92 (Length: 210)

Name: NF10041_low_92
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10041_low_92
NF10041_low_92
[»] chr1 (4 HSPs)
chr1 (1-210)||(29443114-29443323)
chr1 (1-210)||(29423405-29423611)
chr1 (5-176)||(29453131-29453302)
chr1 (16-170)||(29467613-29467767)
[»] chr2 (20 HSPs)
chr2 (54-170)||(10336031-10336147)
chr2 (23-177)||(10347947-10348104)
chr2 (53-170)||(9274704-9274821)
chr2 (17-182)||(10353265-10353439)
chr2 (55-178)||(9316219-9316342)
chr2 (56-107)||(11987374-11987425)
chr2 (54-107)||(12012433-12012486)
chr2 (54-153)||(7115480-7115579)
chr2 (55-178)||(9292122-9292245)
chr2 (54-176)||(9328786-9328908)
chr2 (43-100)||(9364813-9364870)
chr2 (54-107)||(12006005-12006058)
chr2 (55-107)||(9284077-9284129)
chr2 (54-178)||(9321166-9321290)
chr2 (55-103)||(16269277-16269325)
chr2 (17-107)||(10372014-10372107)
chr2 (56-107)||(12018769-12018820)
chr2 (57-107)||(9061022-9061072)
chr2 (50-107)||(17565967-17566024)
chr2 (62-106)||(7612157-7612201)
[»] chr8 (1 HSPs)
chr8 (55-178)||(41966539-41966662)
[»] scaffold0667 (1 HSPs)
scaffold0667 (42-107)||(4658-4726)
[»] chr4 (1 HSPs)
chr4 (50-107)||(561423-561480)
[»] chr3 (1 HSPs)
chr3 (49-102)||(39427819-39427872)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 29443323 - 29443114
Alignment:
Q  1 ccagaaccgaaataccaatttgaaaactctcactattaacatcttcacctatttcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443323 ccagaaccgaaataccaatttgaaaactctcactattaacatcttcacctatttcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgc 29443224  T
Q  101 gacaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaagggaattctcaacaaaatcccccattgttcttcgagcataggaaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443223 gacaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaagggaattctcaacaaaatcccccattgttcttcgagcataggaaaga 29443124  T
Q  201 gtgtaaggca 210  Q
    ||||||||||    
T  29443123 gtgtaaggca 29443114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 29423405 - 29423611
Alignment:
Q  1 ccagaaccgaaataccaatttgaaaactctcactattaacatcttcacctatttcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgc 100  Q
    ||||||||| || |||||||| ||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  29423405 ccagaaccgcaacaccaatttcaaaactctcactattcacttcttcaccaatttcaggaaaaggaacctcattgaaaatctcatgtgttaggttaaacgc 29423504  T
Q  101 gacaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaagggaattctcaacaaaatcccccattgttcttcgagcataggaaaga 200  Q
     |||||| ||||||||| |||| |||||||||||   ||||||| ||||||||| ||||||||||||||| |||||||||   || |||||||| |||||    
T  29423505 aacaattacacgaggtttcaacggatcaagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattg---tttgagcatagtaaaga 29423601  T
Q  201 gtgtaaggca 210  Q
    ||||||||||    
T  29423602 gtgtaaggca 29423611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 29453302 - 29453131
Alignment:
Q  5 aaccgaaataccaatttgaaaactctcactattaacatcttcacctatttcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgaca 104  Q
    ||||| || |||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  29453302 aaccgcaacaccaatttcaaaactctcactattcacttcttcacctatttcaggaaaaggaacctcattgaaaatctcgtgtgttaggttaaacgcaaca 29453203  T
Q  105 attgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaagggaattctcaacaaaatccccc 176  Q
    ||| |||||| ||||||| || |||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  29453202 attacacgagattgcaactgaccaagtttccgagtcattatccagtgaagagaattctcaacaaaaaccccc 29453131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 29467767 - 29467613
Alignment:
Q  16 caatttgaaaactctcactattaacatcttcacctatttcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacgagg 115  Q
    |||||| ||||||||||  |||||| || | |||||||||||||| ||||||||||||||||||||| ||  ||||||||||||||| ||||  || ||     
T  29467767 caattttaaaactctcaacattaacttcataacctatttcaggaagaggaacctcattgaaaatctcaagctttaggttaaacgcgataattaaacaaga 29467668  T
Q  116 ttgcaacagatcaagtttccgagtcattacccagtgaagggaattctcaacaaaa 170  Q
    ||| |||  ||||||||||    |||||| ||| ||||| |||||||||||||||    
T  29467667 ttgtaacccatcaagtttcttcttcattatccaatgaagagaattctcaacaaaa 29467613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 10336031 - 10336147
Alignment:
Q  54 tcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaa 153  Q
    ||||||| ||||||||||||||||||||| |||| ||| ||||||||  |||||  || |||||| |||  |||||||||| ||||||||| ||||||||    
T  10336031 tcaggaagaggaacctcattgaaaatctcaagtgatagattaaacgcagcaattaaacaaggttgtaacccatcaagtttcggagtcattatccagtgaa 10336130  T
Q  154 gggaattctcaacaaaa 170  Q
    | |||||||||||||||    
T  10336131 gagaattctcaacaaaa 10336147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 10347947 - 10348104
Alignment:
Q  23 aaaactctcactattaacatcttcacctatttca---ggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacgaggttgc 119  Q
    ||||||||||| |||||| |||||||||||||||   |||| |||||||||||||||||| || ||||| ||||||||||||||||||  |  ||| ||     
T  10347947 aaaactctcaccattaacttcttcacctatttcatcaggaagaggaacctcattgaaaatttcaagtgtgaggttaaacgcgacaattaaagaaggatgt 10348046  T
Q  120 aacagatcaagtttccgagtcattacccagtgaagggaattctcaacaaaatccccca 177  Q
    |||  ||||||||||   ||||| | ||||||||  ||||||||||||||| ||||||    
T  10348047 aacccatcaagtttcttcgtcataatccagtgaatagaattctcaacaaaaaccccca 10348104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 9274704 - 9274821
Alignment:
Q  53 ttcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtga 152  Q
    |||||||| ||||||| |||||||||| || ||||||||||||||||| ||||||  || ||| ||  ||  ||||| || || ||||||||||||||||    
T  9274704 ttcaggaagaggaaccacattgaaaatatcaagtgttaggttaaacgcaacaattaaacaagggtgtgactcatcaatttccctagtcattacccagtga 9274803  T
Q  153 agggaattctcaacaaaa 170  Q
    || |||||||||||||||    
T  9274804 agagaattctcaacaaaa 9274821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 10353265 - 10353439
Alignment:
Q  17 aatttgaaaactctcactattaacatcttcacctatttca---ggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacga 113  Q
    ||||| |||||||| ||||||||| |||||  ||||||||   |||| |||||||||||||||| |||| ||||||||||||||||||| ||||  |  |    
T  10353265 aattttaaaactcttactattaacttcttcctctatttcatcaggaagaggaacctcattgaaagtctcaagtgttaggttaaacgcgagaattaaatca 10353364  T
Q  114 ggttgcaacagatcaagtttccgagtcattacccagtgaag------ggaattctcaacaaaatcccccattgtt 182  Q
    ||||| ||||| | || |||||  |||  ||||||||||||       ||||||||||||||| |||||||||||    
T  10353365 ggttgaaacagttgaactttcctcgtcgctacccagtgaagagaactagaattctcaacaaaaacccccattgtt 10353439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 178
Target Start/End: Original strand, 9316219 - 9316342
Alignment:
Q  55 caggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaag 154  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||||||||||   || ||| ||  ||   |||  || | |||||||||||||||||||    
T  9316219 caggaagaggaaccacattgaaaatctcaagtgttaggttaaacgcgacaatgaaacaagggtgtgactcttcactttgctgagtcattacccagtgaag 9316318  T
Q  155 ggaattctcaacaaaatcccccat 178  Q
     ||||||| ||||||| |||||||    
T  9316319 agaattctgaacaaaaacccccat 9316342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 11987425 - 11987374
Alignment:
Q  56 aggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaatt 107  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  11987425 aggaaaaggaacctcattgaaaacctcgagtgttaggttaaatgcgacaatt 11987374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 12012486 - 12012433
Alignment:
Q  54 tcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaatt 107  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  12012486 tcaggaaatggaacctcattgaaaagctcaagtgttaggttaaacgcgacaatt 12012433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 7115579 - 7115480
Alignment:
Q  54 tcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaa 153  Q
    ||||||| |||||||||| |||||  ||| ||||||||||||||||||||||||  || ||| ||  ||  |||||||||||||| ||||| ||||||||    
T  7115579 tcaggaagaggaacctcaatgaaacgctcaagtgttaggttaaacgcgacaattaaacaagggtgtgactcatcaagtttccgagacattatccagtgaa 7115480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 178
Target Start/End: Original strand, 9292122 - 9292245
Alignment:
Q  55 caggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaag 154  Q
    |||||||||||||| |||||||| |||| |||||||||||||| ||||||||   || ||| ||  ||  | ||| | ||||||||||||||||||| |     
T  9292122 caggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaattgtccgagtcattacccagtggat 9292221  T
Q  155 ggaattctcaacaaaatcccccat 178  Q
     ||||||| ||||||| |||||||    
T  9292222 agaattctgaacaaaaacccccat 9292245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 9328786 - 9328908
Alignment:
Q  54 tcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaa 153  Q
    ||||||| ||||||| |||||||||| || ||||||||||||||||| ||||||  |  ||| || ||   | ||||||||  |||||||| ||||||||    
T  9328786 tcaggaagaggaaccacattgaaaatttcaagtgttaggttaaacgcaacaattaaagaaggatgtaatccaccaagtttcttagtcattatccagtgaa 9328885  T
Q  154 gggaattctcaacaaaatccccc 176  Q
    | ||||||||||| ||| |||||    
T  9328886 gagaattctcaaccaaaaccccc 9328908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 9364813 - 9364870
Alignment:
Q  43 cttcacctatttcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgc 100  Q
    ||||||||||||||||||  ||||| |||||||||||||| ||||||| |||||||||    
T  9364813 cttcacctatttcaggaagtggaacttcattgaaaatctctagtgttaagttaaacgc 9364870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 12006058 - 12006005
Alignment:
Q  54 tcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaatt 107  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||    
T  12006058 tcaggaaaaggaacctcgttgaaaacctcaagtgttaggttaaacgcgaaaatt 12006005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 9284129 - 9284077
Alignment:
Q  55 caggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaatt 107  Q
    |||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  9284129 caggaagaggaacctctttgaaaacctctagtgttaggttaaacgcgacaatt 9284077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 9321166 - 9321290
Alignment:
Q  54 tcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaa 153  Q
    ||||||| ||||||| |||||||||| || |||||||||||||| || ||||||  |  ||| || ||   | ||||||||   ||||||| ||||||||    
T  9321166 tcaggaagaggaaccacattgaaaatttcaagtgttaggttaaatgcaacaattaaagaaggatgtaatccaccaagtttctttgtcattatccagtgaa 9321265  T
Q  154 gggaattctcaacaaaatcccccat 178  Q
    | ||||||||||||||| |||||||    
T  9321266 gagaattctcaacaaaaacccccat 9321290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 16269277 - 16269325
Alignment:
Q  55 caggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgac 103  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  16269277 caggaagaggaacctcgttgaaaatctcaagtgttaggttaaacgcgac 16269325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 10372014 - 10372107
Alignment:
Q  17 aatttgaaaactctcactattaacatcttcacctatttca---ggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaatt 107  Q
    ||||| |||||| | ||||||||| |||||||||| ||||   || | |||||||||||||||| |||| |||| |||||||||||||| ||||    
T  10372014 aatttcaaaactattactattaacttcttcacctagttcatcagggagaggaacctcattgaaagtctcaagtgataggttaaacgcgagaatt 10372107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 12018820 - 12018769
Alignment:
Q  56 aggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaatt 107  Q
    ||||| |||||||||||||||||| |||||||| |||||||| |||||||||    
T  12018820 aggaagaggaacctcattgaaaatatcgagtgtgaggttaaatgcgacaatt 12018769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 9061072 - 9061022
Alignment:
Q  57 ggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaatt 107  Q
    |||| |||||||||||||||||| || ||||| |||||||| |||||||||    
T  9061072 ggaagaggaacctcattgaaaatttcaagtgtgaggttaaatgcgacaatt 9061022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 17566024 - 17565967
Alignment:
Q  50 tatttcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaatt 107  Q
    ||||||||||| |||||||||  ||||||||||  || | ||||||||||||||||||    
T  17566024 tatttcaggaagaggaacctcgatgaaaatctcttgtttgaggttaaacgcgacaatt 17565967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 7612157 - 7612201
Alignment:
Q  62 aggaacctcattgaaaatctcgagtgttaggttaaacgcgacaat 106  Q
    |||||||||||||||||||||  |||| |||||||| ||||||||    
T  7612157 aggaacctcattgaaaatctcttgtgtaaggttaaaagcgacaat 7612201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 178
Target Start/End: Complemental strand, 41966662 - 41966539
Alignment:
Q  55 caggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaag 154  Q
    |||||| ||||||||  ||||||||||| ||||||||||||||||||||||||  || ||| || ||   |||||||| |   ||||||| |||||||||    
T  41966662 caggaagaggaacctggttgaaaatctcaagtgttaggttaaacgcgacaattaaacaagggtgtaatccatcaagttccttggtcattatccagtgaag 41966563  T
Q  155 ggaattctcaacaaaatcccccat 178  Q
     ||||| | ||||||| |||||||    
T  41966562 agaattgtgaacaaaaacccccat 41966539  T

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Target: scaffold0667 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 4658 - 4726
Alignment:
Q  42 tcttcacctatttc---aggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaatt 107  Q
    ||||||||||||||   ||||| |||||||||||||||||| || |||||||||||||| |||||||||    
T  4658 tcttcacctatttcgtcaggaagaggaacctcattgaaaatttcaagtgttaggttaaaagcgacaatt 4726  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 561423 - 561480
Alignment:
Q  50 tatttcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaatt 107  Q
    ||||||||||| |||||||||||||||||||||  | |  ||||||||||||||||||    
T  561423 tatttcaggaagaggaacctcattgaaaatctcttgggcaaggttaaacgcgacaatt 561480  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 39427819 - 39427872
Alignment:
Q  49 ctatttcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcga 102  Q
    |||||||||||| |||||||||||||||||||||  | |||| |||||||||||    
T  39427819 ctatttcaggaagaggaacctcattgaaaatctcttgagttatgttaaacgcga 39427872  T

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