View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10041_low_95 (Length: 201)
Name: NF10041_low_95
Description: NF10041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10041_low_95 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 13945301 - 13945106
Alignment:
| Q |
1 |
tggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcgttgaacatcctt |
100 |
Q |
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| T |
13945301 |
tggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcgttgaacatcctt |
13945202 |
T |
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| Q |
101 |
aagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacgaatcttcgtgtggtcccctttgcttctccac |
196 |
Q |
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| T |
13945201 |
aagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatgaatcttcctgtgatcccctttgcttccccac |
13945106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 14086490 - 14086295
Alignment:
| Q |
1 |
tggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcgttgaacatcctt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086490 |
tggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcgttgaacatcctt |
14086391 |
T |
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| Q |
101 |
aagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacgaatcttcgtgtggtcccctttgcttctccac |
196 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||| |||| |
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| T |
14086390 |
aagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatgaatcttcctgtgatcccctttgcttccccac |
14086295 |
T |
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