View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10042_high_1 (Length: 725)
Name: NF10042_high_1
Description: NF10042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10042_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 631; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 1 - 710
Target Start/End: Complemental strand, 36891511 - 36890802
Alignment:
| Q |
1 |
atttcatgtaataacctaaagttacaaaaaggctatatatataagcttatgacataagctaattccttctttttacatgctcaagttaagttattatccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36891511 |
atttcatgtaataacctaaagttacaaaaaggctatatatataagcttatgacataagctaattccttctttttacatgctcaagttaagttattatccc |
36891412 |
T |
|
| Q |
101 |
ttttggggaacaaatatctatgatgttgtatcagtgaagacacattaaatcatgtatcagttagttaagcatcaatcaaaggaataaagcnnnnnnnnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36891411 |
ttttggggaacaaatatctatgatgttgtatcagtgaagacacattaaatcatgtatcagttagttaagcatcaatcaaaggaataaagcaaaaaaatta |
36891312 |
T |
|
| Q |
201 |
nnnnnnnnnnnggaagaccgatggcattagaatccatttttatcgcataccgaatagagtggccatcaaccctatagagaagaaataatataaagtggtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36891311 |
aacataaaaaaggaagaccgatggcattagaatccatttttatcgcataccgaatagagtggccatcaaccctatagagaagaaataatataaagtggta |
36891212 |
T |
|
| Q |
301 |
tagttatctggtaacttcatcttgttagaatctgaaccagcctccatctttctcaaatttgatctcattgctttttcatgatccagtggttccacgagta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36891211 |
tagttatctggtaacttcatcttgttagaatctgaaccagcctccatctttctcaaatttgatctcattgttttttcatgatccagtggttccacgagta |
36891112 |
T |
|
| Q |
401 |
tgccttaatttggcaacaaacaaattaaaatactcaaatcacatatatagtacatttttatatgtcataatataaatgttacataattctccaacacatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36891111 |
tgccttaatttggcaacaaacaaattaaaatactcaaatcacatatatagtacatttttatatgtcataatataaatgttacataattctccaacacatg |
36891012 |
T |
|
| Q |
501 |
tatatgtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36891011 |
tatatgtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttg |
36890912 |
T |
|
| Q |
601 |
attcttctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtttcatcagataacacatatgtataaccaattat |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36890911 |
attcttctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtttcatcacataacacatatgtataaccaattat |
36890812 |
T |
|
| Q |
701 |
agaacaatat |
710 |
Q |
| |
|
|| ||||||| |
|
|
| T |
36890811 |
agcacaatat |
36890802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 288 - 668
Target Start/End: Complemental strand, 36878162 - 36877777
Alignment:
| Q |
288 |
atataaagtggtgtagttatctggtaacttcatcttgttagaatctgaaccagcctccatctttctcaaatttgatctcattgctttttcatgatccagt |
387 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36878162 |
atataaagtggtatagttatctggtaacttcatcttgttggaatctgaaccagcctccatctttctcaaatttgacctcattgctttttcatgatccagt |
36878063 |
T |
|
| Q |
388 |
ggttccacgagtatgccttaatttggcaacaaacaaattaaaatactcaaatcacatatatagtacatttttat-atgtcataatataaatgttacataa |
486 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| | |||||| || |||||| ||| ||||| || || | |||||| ||| |||||| |
|
|
| T |
36878062 |
ggttccacgagtatgccttaatttgtcaacaaacaaattaaga--ctcaaaacatatatat-gtagattttaattatatagtaatatcaat---acataa |
36877969 |
T |
|
| Q |
487 |
ttctccaacacatgtatatgta----------cttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctag |
576 |
Q |
| |
|
|| || ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36877968 |
ttttctaacacatatatatgtattaattagtacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctag |
36877869 |
T |
|
| Q |
577 |
tggcaaggactttgagaggagttgattcttctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtt |
668 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
36877868 |
ctgcaaggactttgagaggagttgatccttctttgttcagatgtgtgctgaggtaatcatattgatgtactattatcacagccaaatctgtt |
36877777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 507 - 666
Target Start/End: Complemental strand, 36897705 - 36897546
Alignment:
| Q |
507 |
tacttacagtggtataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattctt |
606 |
Q |
| |
|
||||||| || |||||||||||| |||||||||| ||| |||| | ||||||||| |||||||| || | ||||||| | |||||||| ||| | | |
|
|
| T |
36897705 |
tacttactgtagtataggattcgtttataccatggtaggctgctagaacttttgaaagctgaaggcttattagcaaggagatacagaggagtggatacct |
36897606 |
T |
|
| Q |
607 |
ctttgttcagatgtgtgcttaggaaatcatagtaatgtactactatcacagccaaatctg |
666 |
Q |
| |
|
||| |||| |||||||||| |||||| ||||||||| | ||| ||||||||| ||||||| |
|
|
| T |
36897605 |
cttcgttctgatgtgtgctaaggaaagcatagtaatttgctattatcacagctaaatctg |
36897546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 36899716 - 36899683
Alignment:
| Q |
73 |
ttacatgctcaagttaagttattatcccttttgg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
36899716 |
ttacatgctcaagttaagttattatcccatttgg |
36899683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University