View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10042_high_3 (Length: 369)
Name: NF10042_high_3
Description: NF10042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10042_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 3880051 - 3880396
Alignment:
| Q |
16 |
aattcaaataagtgttttcctactcttgatcccttttacacaattctaattgttttttatataatcaactaatccagctgtaccataacttattgattga |
115 |
Q |
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| T |
3880051 |
aattcaaataagtgttttcctactcttgatcccttttacacaattctaattgttttttatataatcaactaatccagctgtaccataacttattgattga |
3880150 |
T |
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| Q |
116 |
agttttgcgtgtgatttttataatactgatgtactttt---gtatgtcatattgatgaagtttatgaaagggtattcttggtattctcacaaaatcagtt |
212 |
Q |
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| T |
3880151 |
agttttgcttgtgatttttataatactgatgtactttttttgtatgtcatattgatgaagtttatgaaagggtattcttggtattctcacaaaatcagtt |
3880250 |
T |
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| Q |
213 |
taaagaattactgaaatttgtgactttagttgaaataattgcatgaatcattattagttgttactatcagtgtttagcggtagatgatccttgggataat |
312 |
Q |
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| T |
3880251 |
taaagaactactgaaatttgtgactttagttgaaataattgcatgaatcattattagttgttactatcagtgtttagcggtagatgatccttgggataat |
3880350 |
T |
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| Q |
313 |
gtctcaacttttctggctgttgtatctgtgagagattaggtttctt |
358 |
Q |
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| T |
3880351 |
gtctcaacttttctggctgttgtatctgtgagagattaggtttctt |
3880396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 3866120 - 3866160
Alignment:
| Q |
28 |
tgttttcctactcttgatcccttttacacaattctaattgt |
68 |
Q |
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| T |
3866120 |
tgttttcccactcttgatcctttctacacaattctaattgt |
3866160 |
T |
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