View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10042_high_4 (Length: 364)
Name: NF10042_high_4
Description: NF10042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10042_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 9889284 - 9888938
Alignment:
| Q |
1 |
aggcagtatactctcaaatctcaagtaaattaccatcaggctaactcaagtggatttctcgtaactattttttaaatttcaataaattaaatattatagg |
100 |
Q |
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| T |
9889284 |
aggcagtatactctcaaatctcaagtaaattactatcaggctaattcaagtggatttctcgtaactattttttaaatttcaataaattaaatattatagg |
9889185 |
T |
|
| Q |
101 |
gacataacatcacacctttacttaatttggaattaatttaccaatttggaaataaatgggaccttgtgattgtcattccaactacattaggtattagcaa |
200 |
Q |
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| T |
9889184 |
gacatgacatcacacctttacttaatttggaattaatttaccaatttggaaataaatgggaccttgtgattgtcattccaactacattaggtatgagcaa |
9889085 |
T |
|
| Q |
201 |
agaaagataaagtcaccaatagcaaacacgtcctgttcatttaacagtttgatccaattgaaaaatgtgatcttatgatttgttccctctcaccacttgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9889084 |
agaaagataaagtcaccaatagcaaacacgtcctgttcatttaacagtttgatccaattgaaaaatgtgatcttatgatttgttccctctcaccacttgg |
9888985 |
T |
|
| Q |
301 |
tcattcttcctatataagttaagtaccttacattcttagctctataa |
347 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9888984 |
tcattcttcctatataagttaagtaccttacattctttgctctataa |
9888938 |
T |
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