View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10042_high_9 (Length: 239)
Name: NF10042_high_9
Description: NF10042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10042_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 491688 - 491759
Alignment:
| Q |
153 |
gagggataccgatagatttaatgttgaaagaagctctccaagattgagtgacgtgattttaagtggaaaact |
224 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
491688 |
gagggataccgatagatttaatgttgcaagaagctctccaagattgagtgacgtgattttaagtggaaaact |
491759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 491074 - 491147
Alignment:
| Q |
1 |
aaccatagcgaagtattcacagttggcaagtcgaaac-----aaaataaaaatcatgtcagttttaaaataaat |
69 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
491074 |
aaccatagcgaaatattcacagttggcaagtcgaaacaaaataaaataaaaatcatgtcagttgtaaaataaat |
491147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 491615 - 491652
Alignment:
| Q |
77 |
tatctccttaattaaaatttgaccaataccttcctcag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
491615 |
tatctccttaattaaaatttgaccaataccttcctcag |
491652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University