View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10042_low_11 (Length: 325)
Name: NF10042_low_11
Description: NF10042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10042_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 306
Target Start/End: Original strand, 43664033 - 43664308
Alignment:
| Q |
30 |
agcaaagggtatgctgtaagtgatctgaacaaataataacacaagattagtgttagtttaacttgcattgcataaagtttcttgactttttgctttgtaa |
129 |
Q |
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| T |
43664033 |
agcaaagggtatgctgtaagtgatctgaacaaataataacacaagattagtgttagtttaacttgcattgcataaagtttcttgacttt----------a |
43664122 |
T |
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| Q |
130 |
attttaagcacttttagtaactattctctctttaggaaagaaatggataataattgaagaa----------acagattttggacttcaaaagaaagagca |
219 |
Q |
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| T |
43664123 |
attttaagcacttttagtaactattctctctttaggaaagaaatgaataataattgaagaacattaaagaaacagattt-ggacttcaaaacaaagaaca |
43664221 |
T |
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| Q |
220 |
tcacgagaaagctaaactgctgtcaggaaattgcaactcaaaagtgaatgaattaaattcaatcactgtaaataaaatagaacctca |
306 |
Q |
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| T |
43664222 |
tcacgagaaagctaaactgctgtcaggaaattgcaactcaaaagtgaatgaattaaattcaatcactgtaaataaaatagaacctca |
43664308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 24559899 - 24559738
Alignment:
| Q |
30 |
agcaaagggtatgctgtaagtgatctgaacaaataataacacaagattagtgttagtttaacttgcattgcataaagtttcttgactttttgctttgtaa |
129 |
Q |
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| T |
24559899 |
agcaaagggtatgctgtaagtgatctgaacaaataataacacaagattagtgttagtttaacttgcattgtataaagtttcttgactttttgctttgtaa |
24559800 |
T |
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| Q |
130 |
attttaagcacttttagtaactattctctctttaggaaagaaatggataataattgaagaaa |
191 |
Q |
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| T |
24559799 |
attttaagcacttttagtaactattctctctttaggaaagaaatgaataataattgaagaaa |
24559738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 19138512 - 19138577
Alignment:
| Q |
97 |
ttgcataaagtttcttgactttttgctttgtaaattttaagcacttttagtaactattctctcttt |
162 |
Q |
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| T |
19138512 |
ttgcataaagttactttactttttgctttgtaaattttaagcacttttagtaactattctctcttt |
19138577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 51815461 - 51815408
Alignment:
| Q |
236 |
ctgctgtcaggaaattgcaactcaaaagtgaatgaattaaattcaatcactgta |
289 |
Q |
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| T |
51815461 |
ctgctgtcaggaaattgcaactcaaaagtgaatgaaataaattcaatcattgta |
51815408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 51815564 - 51815510
Alignment:
| Q |
137 |
gcacttttagtaactattctctctttaggaaagaaatggataataattgaagaaa |
191 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
51815564 |
gcacttttattaactcttctctctttaggaaagaaatggataatagttgaagaaa |
51815510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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