View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10042_low_12 (Length: 254)
Name: NF10042_low_12
Description: NF10042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10042_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 29045372 - 29045617
Alignment:
| Q |
1 |
tttctatggagatttcaagttcgattctcccgggtatcaatttcgatagaatagtttgatttcttaagaaaaaatttgagtttctattttcacttctagt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29045372 |
tttctatgaagatttcaagttcgattctcccaggtatcaatttcgatagaatagtttgatttcttaagaaaaaacttgagtttctattttcacttctagt |
29045471 |
T |
|
| Q |
101 |
ttaacacc--ctccttcttcttttgaaaatacagaatcattgggagttcatgtactaatccttaattttcttttgaannnnnnnactttgtattaagatc |
198 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29045472 |
ttaacaccctctcctccttcttttgaaaatacagaatcattgggagttcatgtattaatccttaattttcttttgaatttttttactttgtattaagatc |
29045571 |
T |
|
| Q |
199 |
attctccctgtattgagcagagtacaaggaatctatggagcctatg |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29045572 |
attctccctgtattgagcagagtacaaggagtctatggagcctatg |
29045617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 15073163 - 15073224
Alignment:
| Q |
12 |
atttcaagttcgattctcccgggtatcaatttcgatagaatagtttgatttcttaagaaaaa |
73 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||||| || |||||||| ||||||| ||||| |
|
|
| T |
15073163 |
atttcaggttcgattctctctggtatcaatttcgatggactagtttgacttcttaaaaaaaa |
15073224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University