View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10042_low_13 (Length: 250)
Name: NF10042_low_13
Description: NF10042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10042_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 43663961 - 43663717
Alignment:
| Q |
1 |
aattaaacaattttactactaaacaaaagtgcttaatgatttgctttttgttcaannnnnnncagggttatctctaggagttctcaatcttgctattgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43663961 |
aattaaacaattttactactaaacaaaagtgcttaatgttttgctttttgttcaatttttttcagggttatctctaggagttctcaatcttgctattgtc |
43663862 |
T |
|
| Q |
101 |
ataccacaggttagaatttaatacacttcannnnnnnnnnacttgttaattacttcactttatatattaaattaat----tttagtaatatgaattaaac |
196 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43663861 |
ataccacaggttagaatttaatacacttcattttgtttttacttgttaattacttcactttatatattaaattaatcttatttagtaatatgaattaaac |
43663762 |
T |
|
| Q |
197 |
aattgaccaagtgtgacaacatgtatgtgtagatgattgtatctg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43663761 |
aattgaccaagtgtgacaacatgtatgtgtagatgattgtctctg |
43663717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 24559971 - 24560146
Alignment:
| Q |
1 |
aattaaacaattttactactaaacaaaagtgcttaatgatttgctttttgttcaannnnnnncagggttatctctaggagttctcaatcttgctattgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
24559971 |
aattaaacaattttactactaaacaaaagtgcttaatgttttgctttttgttcaatttttttcaaggttatctctaggagttctcaatcttgctattgtc |
24560070 |
T |
|
| Q |
101 |
ataccacaggttagaatttaatacacttcannnnnnnnnnacttgttaattacttcactttatatattaaattaat |
176 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24560071 |
ataccacaggttagaatttaatacacttcttttttttcttacttgttaattacttcactttatatattaaattaat |
24560146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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