View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10042_low_15 (Length: 242)
Name: NF10042_low_15
Description: NF10042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10042_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15814925 - 15815148
Alignment:
| Q |
1 |
acaatacttaaatgatagcttaaggatgaggttttcataacagtttggtgtgctgtttaaaattaaagtgattaaagaaggtgaataaaaactacatggg |
100 |
Q |
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| T |
15814925 |
acaatacttaaatgatagcttaaggatggggttttcataacagtatggtgtgcagattaaaattaaagtgattaaagaaggtgaataaaaactacatggg |
15815024 |
T |
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| Q |
101 |
ttgtttgaatccttaattaatttgtattaaagtgattctggaagcagcttatgtcggtttgcctatgtcgtgttatttgtatttaatgtcctaaaatttt |
200 |
Q |
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| T |
15815025 |
ttgtttgaatccttaattaatttgtattaaagtgattctggaagcagcttatgtcggtttgcctatgtcgtattatttgtatttaatgtcctaaaaattt |
15815124 |
T |
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| Q |
201 |
taggaaacatatataggtgtgagg |
224 |
Q |
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| T |
15815125 |
taggaaacatatataggtgtgagg |
15815148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 16086061 - 16086178
Alignment:
| Q |
5 |
tacttaaatgatagcttaaggatgaggttttcataacagtttggtgtgctgtttaaaattaaagtgattaaagaaggtgaataaaaactacatgggttgt |
104 |
Q |
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| T |
16086061 |
tacttaagtgatatcttaaggagggggttttcataataggttagtttgcagattaaaattaaagtgattaaagcaggtgattaaaaaccacaagggttgt |
16086160 |
T |
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| Q |
105 |
ttgaatccttaattaatt |
122 |
Q |
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| T |
16086161 |
ttgaatccctaattaatt |
16086178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 16072413 - 16072527
Alignment:
| Q |
8 |
ttaaatgatagcttaaggatgaggttttcataacagtttggtgtgctgtttaaaattaaagtgattaaagaaggtgaataaaaactacatgggttgtttg |
107 |
Q |
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| T |
16072413 |
ttaagtgatagcttaaggaggggagttttataatagtttggtttgcagattaaaattaaagtgattaaagcaggtgattaaaaaccacaagggttgtttg |
16072512 |
T |
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| Q |
108 |
aatccttaattaatt |
122 |
Q |
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|||| ||||||||| |
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| T |
16072513 |
aatcactaattaatt |
16072527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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