View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10042_low_2 (Length: 512)
Name: NF10042_low_2
Description: NF10042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10042_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 501
Target Start/End: Complemental strand, 34962764 - 34962281
Alignment:
| Q |
18 |
tgaagaagaaaaaaccggtggtaagagccggatacttgctaaagaatccaaccggagcaaccttctctccactgtaaacnnnnnnncaacattagtgagt |
117 |
Q |
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| T |
34962764 |
tgaagaagaaaaaaccggtggtaagagccggatacttgctaaagaatccaaccggagcaaccttctctccactgtaaacaaaaaaacaacattagtgagt |
34962665 |
T |
|
| Q |
118 |
acagtaacactacagagtttttaagtcagaacggattaaacggacctcacccggcggaatcatcggcagcagcgaggcaaggacggaggagtacaccact |
217 |
Q |
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| T |
34962664 |
acagtaacactacagagtttttaagtcagaacggattaaacggacctcacccggcggaatcatcggcagcggcgaggcaaggacggaggagtacaccact |
34962565 |
T |
|
| Q |
218 |
tttcttaagagcaggtgaacagagttcaggacgaagttgtcttccaaagacaaggttcccgccatcagagactgatccgatcgatttcacggagaggatg |
317 |
Q |
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| T |
34962564 |
tttcttaagagcaggtgaacagagttcaggacgaagttgtcttccaaagacaaggttcccgccatcagagactgatccgatcgatttcacggagaggatg |
34962465 |
T |
|
| Q |
318 |
gaagcgccattggtgagatgttcacgatgaagtttgttgagacgagggagggaggagagtgtggtggcgcgtgacaacactcgtgactccattgggatca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34962464 |
gaagcgccattggtgagatgttcacgatgaagtttgttgagacgagggagggaggagagtgtggtggcgcgtgacaacactcgtgactccattgggatca |
34962365 |
T |
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| Q |
418 |
aaatgtgggaagatgataaacaagtagagagtgatatatggatgatgttggtgttggtacctgtggttctcgttaaccgtctct |
501 |
Q |
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| T |
34962364 |
aaatgtgggaagatgataaacaagtagagagtgatatatggatgatgttggtgttggtacctgtggttctcgttaaccgtctct |
34962281 |
T |
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