View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10042_low_4 (Length: 476)
Name: NF10042_low_4
Description: NF10042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10042_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 32024990 - 32024572
Alignment:
| Q |
18 |
acatcaaacataaacccaaatcaacaaattaaatagaaaacaacccaaaagaagtcaaacacacagatcatcaaaattccatttaatcacacagttcaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32024990 |
acatcaaacataaacccaaatcaacaaattaaatagaaaacaacccaaaagaagtcaaacacacagatcatcaaaattccatttaatcacacagttcaac |
32024891 |
T |
|
| Q |
118 |
ccaaaagagactcacatatctattttcctcattattaaagattatcaaaggtcaacgaacaaactaagtgtatgtttggtttgtcttcttttcaccgcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32024890 |
ccaaaagagactcacatatctattttcctcattattaaagattatcaaaggtcaac----aaactaagtgtatgtttggtttgtcttcttttcaccgcca |
32024795 |
T |
|
| Q |
218 |
ccacacgattacatagcattttgaagtgaaaattagaagctaccaagtggagcttccgcgttaatgtgggtttttgtacaccacgaagccaaaccaaaca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32024794 |
ccacacgattacatagcattttgaagtgaaaattagaagctaccaagtggagcgtccgcgttaatgtgggtttttgtacaccacgaagccaaaccaaaca |
32024695 |
T |
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| Q |
318 |
agcactaagtattatatgcattgtaaaggatcattcttacacaacagcaaataagcttagctacctaaggcacaaatcattaactagacagtaaaagaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32024694 |
agcactaagtattatatgcattgtaaaggatcattcttacacaacagcaaataagcttagctacctaaggcacaaatcattaactagacagtaaaagaac |
32024595 |
T |
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| Q |
418 |
tacttctacataacaaccatatc |
440 |
Q |
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| T |
32024594 |
tacttctacataacaaccatatc |
32024572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 32026389 - 32026304
Alignment:
| Q |
51 |
tagaaaacaacccaaaagaagtcaaacacacagatcatcaaaattccatttaatcacacagttcaacccaaaagagactcacatat |
136 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||| ||| || || |||||||||| |||||||| |
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| T |
32026389 |
tagaaaacaaccaaaatgaagtcaaacacacagatcatcaaaatttcatttactcatacacttaaatccaaaagagattcacatat |
32026304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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