View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10042_low_5 (Length: 427)

Name: NF10042_low_5
Description: NF10042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10042_low_5
NF10042_low_5
[»] chr8 (8 HSPs)
chr8 (7-417)||(32729231-32729642)
chr8 (160-212)||(33435410-33435462)
chr8 (156-219)||(33542100-33542162)
chr8 (163-219)||(559969-560025)
chr8 (160-219)||(8238766-8238825)
chr8 (160-215)||(38924418-38924473)
chr8 (154-220)||(10340234-10340300)
chr8 (154-214)||(34273134-34273194)
[»] chr3 (4 HSPs)
chr3 (159-219)||(25258078-25258138)
chr3 (159-220)||(27177335-27177396)
chr3 (158-212)||(37058990-37059044)
chr3 (114-182)||(25258112-25258179)
[»] chr6 (2 HSPs)
chr6 (159-219)||(22682573-22682634)
chr6 (161-217)||(24881947-24882003)
[»] chr7 (7 HSPs)
chr7 (159-215)||(16780772-16780828)
chr7 (159-218)||(35851973-35852032)
chr7 (160-214)||(48078598-48078652)
chr7 (159-218)||(24558526-24558586)
chr7 (159-219)||(25690732-25690792)
chr7 (154-215)||(101294-101355)
chr7 (154-219)||(11754690-11754755)
[»] chr4 (9 HSPs)
chr4 (160-219)||(9954535-9954594)
chr4 (163-215)||(5961798-5961850)
chr4 (152-216)||(27584364-27584428)
chr4 (160-220)||(43115606-43115666)
chr4 (163-217)||(3741710-3741764)
chr4 (154-277)||(11444837-11444963)
chr4 (159-217)||(19689265-19689323)
chr4 (122-219)||(40423287-40423383)
chr4 (160-220)||(79525-79585)
[»] chr1 (8 HSPs)
chr1 (157-215)||(24603067-24603125)
chr1 (160-202)||(32191158-32191200)
chr1 (127-200)||(44574736-44574808)
chr1 (154-212)||(8041143-8041202)
chr1 (130-219)||(768269-768356)
chr1 (122-215)||(34123146-34123238)
chr1 (237-277)||(5759965-5760005)
chr1 (164-220)||(17492734-17492790)
[»] chr2 (11 HSPs)
chr2 (154-215)||(15538954-15539015)
chr2 (159-216)||(21488865-21488922)
chr2 (160-219)||(12670782-12670841)
chr2 (161-220)||(30481699-30481758)
chr2 (154-219)||(14442112-14442177)
chr2 (154-219)||(33710592-33710657)
chr2 (159-215)||(28314673-28314729)
chr2 (159-218)||(8476949-8477008)
chr2 (160-217)||(34557336-34557393)
chr2 (159-215)||(4422822-4422878)
chr2 (163-219)||(15605407-15605463)
[»] chr5 (4 HSPs)
chr5 (165-215)||(35943552-35943602)
chr5 (159-212)||(14105978-14106031)
chr5 (159-212)||(23311781-23311834)
chr5 (163-219)||(35895034-35895090)
[»] scaffold0223 (1 HSPs)
scaffold0223 (163-215)||(16334-16386)


Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 417
Target Start/End: Complemental strand, 32729642 - 32729231
Alignment:
Q  7 cgtcttggtctagataaaatcacacttatatcttggggttggtttaaatgtaagaaaattaaacttcacaattataaaattattcatatccttatattcg 106  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32729642 cgtcttagtctagataaaatcaaacttatatcttggggttggtttaaatgtaagaaaattaaacttcacaattataaaattgttcatatccttatattcg 32729543  T
Q  107 gaggtagtaaactgccgctcgacatttttcaacggcagtttaaccgtcgctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  32729542 gaggtagtaaactgccgctcgacatttttcaacggcagtttaactgtcgctgacacttttaagatcggttgaaccgacttaaaaaataattgaactgatc 32729443  T
Q  207 ttaaaagtgtcagttacatgccgctaatacaagagaatgagtaatttcataagtgagaaatgtaattttctaaatgtaaggtgaagggttcaattatggg 306  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32729442 ttaaaagtgtcagttacatgccgctaatataagagaatgagtaatttcataagtgagaaatgtaattttctaaatgtaaggtgaagggttcaattatggg 32729343  T
Q  307 tttaatcatagatgtctttgtctattgggttgtttagggggttagtgcttcaagtg--tgtggtttggtgaccgnnnnnnncgtttggaattttggtttc 404  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||       |||||||||||||||||||    
T  32729342 tttaatcatagatgtctttgtctattgggttgttta-ggggttagtgcttcaagtgtttgtggtttggtgaccgtttttttcgtttggaattttggtttc 32729244  T
Q  405 cttttaacctttg 417  Q
    |||||||||||||    
T  32729243 cttttaacctttg 32729231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 33435410 - 33435462
Alignment:
Q  160 cacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaa 212  Q
    |||||||||||||||||||| | ||||||||| ||||| ||||||||||||||    
T  33435410 cacttttaagatcggttgaaccgacttaaaaagtaattaaactgatcttaaaa 33435462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 33542100 - 33542162
Alignment:
Q  156 ctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    |||||||||||||||||||||||| | ||||||||||| | |||||| |||||||||| |||||    
T  33542100 ctaacacttttaagatcggttgaa-cgacttaaaaaatgactgaactaatcttaaaagggtcag 33542162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 560025 - 559969
Alignment:
Q  163 ttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    |||||| |||||||||| ||||||||||||||||||||  | |||||||| ||||||    
T  560025 ttttaaaatcggttgaaccaacttaaaaaataattgaatcggtcttaaaaatgtcag 559969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 8238825 - 8238766
Alignment:
Q  160 cacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    |||||||||||||||||||  | ||| ||||| | ||||||||||||| |||||||||||    
T  8238825 cacttttaagatcggttgatccgactaaaaaagtgattgaactgatctaaaaagtgtcag 8238766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 38924473 - 38924418
Alignment:
Q  160 cacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtg 215  Q
    ||||||||||||| |||||| | ||||||||| | ||||||| |||||||||||||    
T  38924473 cacttttaagatcagttgaaccgacttaaaaagtgattgaaccgatcttaaaagtg 38924418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 10340300 - 10340234
Alignment:
Q  154 cgctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcagt 220  Q
    |||| ||||||||||||||||  ||  ||||||||||||| ||||||  ||||| ||||||||||||    
T  10340300 cgctgacacttttaagatcggccgacccaacttaaaaaatgattgaatcgatctaaaaagtgtcagt 10340234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 34273134 - 34273194
Alignment:
Q  154 cgctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagt 214  Q
    |||| |||||||||| |||||||||| | ||||||| | | ||||||| ||||||||||||    
T  34273134 cgctgacacttttaaaatcggttgaaccgacttaaacagtgattgaaccgatcttaaaagt 34273194  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 25258078 - 25258138
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    ||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||    
T  25258078 acacttttaagatcggttgaaccgacttaaaaagtgattgaactgatcttaaaagtgtcag 25258138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 27177396 - 27177335
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcagt 220  Q
    ||||||||||||||||||||  ||||||||||||| ||||||| ||||| ||||||||||||    
T  27177396 acacttttaagatcggttgacccaacttaaaaaatgattgaaccgatctaaaaagtgtcagt 27177335  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 37058990 - 37059044
Alignment:
Q  158 aacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaa 212  Q
    |||||||||||||||||||||||| ||||||||||| ||||||  ||||||||||    
T  37058990 aacacttttaagatcggttgaatcgacttaaaaaatgattgaatcgatcttaaaa 37059044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 25258179 - 25258112
Alignment:
Q  114 taaactgccgctcgacatttttcaacggcagtttaaccgtcgctaacacttttaagatcggttgaatca 182  Q
    ||||||||| ||| ||||||||||| ||||| ||||| || ||| |||||||||||||| ||| |||||    
T  25258179 taaactgccactcaacatttttcaatggcag-ttaactgttgctgacacttttaagatcagttcaatca 25258112  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 22682634 - 22682573
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaataattgaac-tgatcttaaaagtgtcag 219  Q
    ||||||||||||||||||||| ||||||||||||| |||||||  |||||||||||||||||    
T  22682634 acacttttaagatcggttgaaccaacttaaaaaatgattgaacaggatcttaaaagtgtcag 22682573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 24881947 - 24882003
Alignment:
Q  161 acttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtc 217  Q
    |||||| | |||||||||||||| ||||||| | ||||||||| ||||||| |||||    
T  24881947 actttttaaatcggttgaatcaatttaaaaagtgattgaactgctcttaaacgtgtc 24882003  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 16780772 - 16780828
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtg 215  Q
    ||||||||||||||||||||||| ||||||||| | ||||||| |||||||||||||    
T  16780772 acacttttaagatcggttgaatcgacttaaaaagtgattgaaccgatcttaaaagtg 16780828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 35851973 - 35852032
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtca 218  Q
    ||||||||||||||||||||| | ||||| ||| | ||||||| ||||||||||||||||    
T  35851973 acacttttaagatcggttgaaccgacttagaaagtgattgaaccgatcttaaaagtgtca 35852032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 48078652 - 48078598
Alignment:
Q  160 cacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagt 214  Q
    |||||||||||||||||||| | ||||||||| | |||||| |||||||||||||    
T  48078652 cacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 48078598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 24558526 - 24558586
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaa-taattgaactgatcttaaaagtgtca 218  Q
    |||||||||| ||||||| || |||||||||||| | ||||||||| ||||||||||||||    
T  24558526 acacttttaaaatcggttaaaccaacttaaaaaaatgattgaactggtcttaaaagtgtca 24558586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 25690792 - 25690732
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    ||||||||||||||||||||| |  |||||||| | ||||||| ||||| |||||||||||    
T  25690792 acacttttaagatcggttgaaccggcttaaaaagtgattgaaccgatctaaaaagtgtcag 25690732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 101294 - 101355
Alignment:
Q  154 cgctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtg 215  Q
    |||| ||||||||||||||||||||    ||||||||| | ||||||||||||| |||||||    
T  101294 cgctgacacttttaagatcggttgacctgacttaaaaagtgattgaactgatctaaaaagtg 101355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 11754690 - 11754755
Alignment:
Q  154 cgctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    |||| ||||||||||||| ||||||| | |  |||||| | ||||||| |||||||||||||||||    
T  11754690 cgctgacacttttaagattggttgaaccgagataaaaagtgattgaaccgatcttaaaagtgtcag 11754755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 9954594 - 9954535
Alignment:
Q  160 cacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    |||||||||||||| ||||  |||||||||||||||||||| |||||| |||||||||||    
T  9954594 cacttttaagatcgattgacccaacttaaaaaataattgaattgatctaaaaagtgtcag 9954535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 5961850 - 5961798
Alignment:
Q  163 ttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtg 215  Q
    ||||||||||||||||  ||||||||||| | |||||||||||||||||||||    
T  5961850 ttttaagatcggttgagccaacttaaaaagtgattgaactgatcttaaaagtg 5961798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 27584364 - 27584428
Alignment:
Q  152 gtcgctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgt 216  Q
    |||||| |||| |||||||||||||| ||||||||||||  | ||||||| ||||||||||||||    
T  27584364 gtcgctgacacctttaagatcggttgtatcaacttaaaatttgattgaaccgatcttaaaagtgt 27584428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 43115666 - 43115606
Alignment:
Q  160 cacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcagt 220  Q
    ||||| |||| | ||||||| | ||||||||||| ||||||| ||||||||||||||||||    
T  43115666 cacttctaaggttggttgaaccgacttaaaaaattattgaaccgatcttaaaagtgtcagt 43115606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 3741764 - 3741710
Alignment:
Q  163 ttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtc 217  Q
    |||||| |||||||||| ||||||||||||| |||| || ||||||||| |||||    
T  3741764 ttttaaaatcggttgaaccaacttaaaaaatgattgcaccgatcttaaatgtgtc 3741710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 11444963 - 11444837
Alignment:
Q  154 cgctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcagttaca----tgccgctaatacaagagaatgagta 249  Q
    |||| |||||||||| |||||| ||| | |||||||||   | ||||| |||||||||||||||||   ||    ||||||||||| ||| ||||||| |    
T  11444963 cgctgacacttttaacatcggtcgaa-cgacttaaaaagcgaatgaaccgatcttaaaagtgtcagcagcaggactgccgctaatataagggaatgagga 11444865  T
Q  250 atttcataagtgagaaatgtaattttct 277  Q
    |||||||||||||||   ||||||||||    
T  11444864 atttcataagtgagatgagtaattttct 11444837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 19689265 - 19689323
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtc 217  Q
    |||||||||| || |||| |||||||||||||| | |||||||  ||||||||||||||    
T  19689265 acacttttaaaattggttaaatcaacttaaaaagtgattgaaccaatcttaaaagtgtc 19689323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 40423287 - 40423383
Alignment:
Q  122 cgctcgacatttttcaacggcagtttaaccgtcgctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    |||| ||||||||||||||| |||| |  | | ||| |||||||||||||  |||||| | ||||||||| | ||||||| |||||||||| ||||||    
T  40423287 cgcttgacatttttcaacggaagttaactcat-gctgacacttttaagatttgttgaaccgacttaaaaagtgattgaaccgatcttaaaattgtcag 40423383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 79525 - 79585
Alignment:
Q  160 cacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcagt 220  Q
    ||||||||||||| |||||  | ||||||||| | ||||||| ||||| ||||||||||||    
T  79525 cacttttaagatcagttgacccgacttaaaaagtgattgaaccgatctaaaaagtgtcagt 79585  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 24603067 - 24603125
Alignment:
Q  157 taacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtg 215  Q
    ||||||||||||||||||||||| || |||||||||| | ||||| |||||||||||||    
T  24603067 taacacttttaagatcggttgaaccagcttaaaaaattagtgaaccgatcttaaaagtg 24603125  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 32191158 - 32191200
Alignment:
Q  160 cacttttaagatcggttgaatcaacttaaaaaataattgaact 202  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  32191158 cacttttaagatcggttgaaccaacttaaaaaatgattgaact 32191200  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 44574808 - 44574736
Alignment:
Q  127 gacatttttcaacggcagtttaaccgtcgctaacacttttaagatcggttgaatcaacttaaaaaataattgaa 200  Q
    ||||||||||| ||| |||| ||  ||||||||||||||||||||||||||||  || ||||||| ||||||||    
T  44574808 gacatttttcagcggtagtt-aattgtcgctaacacttttaagatcggttgaactaatttaaaaagtaattgaa 44574736  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 8041202 - 8041143
Alignment:
Q  154 cgctaacacttttaagat-cggttgaatcaacttaaaaaataattgaactgatcttaaaa 212  Q
    |||||| ||||||||||| |||||||| ||||||||||| | ||||||| ||||||||||    
T  8041202 cgctaaaacttttaagattcggttgaaccaacttaaaaattgattgaaccgatcttaaaa 8041143  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 768269 - 768356
Alignment:
Q  130 atttttcaacggcagtttaaccgtcgctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    |||||||| |||||  ||||| | ||||| || |||||| || | ||||| | ||||||||| | |||||||||||||||||||||||||    
T  768269 atttttcagcggca--ttaactgccgctatcatttttaaaattgattgaaccgacttaaaaagtgattgaactgatcttaaaagtgtcag 768356  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 34123146 - 34123238
Alignment:
Q  122 cgctcgacatttttcaacggcagtttaaccgtcgctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtg 215  Q
    |||||||||||||||| ||| || |||||   |||| |||||||||| |||||||||| || |||||||| | |||||  |||| |||||||||    
T  34123146 cgctcgacatttttcagcggaag-ttaactcacgctgacacttttaaaatcggttgaaccagcttaaaaagtgattgagttgatattaaaagtg 34123238  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 5760005 - 5759965
Alignment:
Q  237 aagagaatgagtaatttcataagtgagaaatgtaattttct 277  Q
    |||| ||||||||||||||||||||||||  ||||||||||    
T  5760005 aagataatgagtaatttcataagtgagaagagtaattttct 5759965  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 17492734 - 17492790
Alignment:
Q  164 tttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcagt 220  Q
    ||||||||| |||||||| ||||||||| | ||||||  ||| ||||||||||||||    
T  17492734 tttaagatcagttgaatcgacttaaaaagtgattgaatcgatattaaaagtgtcagt 17492790  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 15539015 - 15538954
Alignment:
Q  154 cgctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtg 215  Q
    |||| ||||||||||||||| ||||| | ||||||||| ||||||||| |||||||||||||    
T  15539015 cgctgacacttttaagatcgattgaaccgacttaaaaagtaattgaaccgatcttaaaagtg 15538954  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 21488922 - 21488865
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgt 216  Q
    |||||||||||||||||||||   ||||||||||| ||||||| ||||||||||||||    
T  21488922 acacttttaagatcggttgaactgacttaaaaaatgattgaaccgatcttaaaagtgt 21488865  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 12670841 - 12670782
Alignment:
Q  160 cacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    ||||||||||||||||||| ||  |||||||| | ||||||| |||||||||||||||||    
T  12670841 cacttttaagatcggttgagtcggcttaaaaattgattgaaccgatcttaaaagtgtcag 12670782  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 30481758 - 30481699
Alignment:
Q  161 acttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcagt 220  Q
    ||||||||||| ||||||||   |||||||||| ||||||||||||||||||||| ||||    
T  30481758 acttttaagataggttgaattggcttaaaaaattattgaactgatcttaaaagtgccagt 30481699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 14442177 - 14442112
Alignment:
Q  154 cgctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    ||||| ||| ||||||||| ||||||||  |||||||| | |||| ||||||||||||||||||||    
T  14442177 cgctagcacctttaagatcagttgaatcggcttaaaaagtgattgtactgatcttaaaagtgtcag 14442112  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 33710657 - 33710592
Alignment:
Q  154 cgctaacacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    |||||||||||||||||| | |||||||   ||| ||||| ||||||| |||||||||||||||||    
T  33710657 cgctaacacttttaagattgtttgaatcggtttagaaaatgattgaaccgatcttaaaagtgtcag 33710592  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 28314673 - 28314729
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtg 215  Q
    |||||||||||||||||| || ||| ||||||| | ||||||| |||||||||||||    
T  28314673 acacttttaagatcggttcaaccaatttaaaaagtgattgaaccgatcttaaaagtg 28314729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 8477008 - 8476949
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtca 218  Q
    |||||||||||||  |||||| | ||||| ||| |||||||| |||||||||||||||||    
T  8477008 acacttttaagattagttgaacccacttagaaagtaattgaattgatcttaaaagtgtca 8476949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 34557336 - 34557393
Alignment:
Q  160 cacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtc 217  Q
    |||||||||||||| ||||| | | ||||||||| ||||||| |||||||||| ||||    
T  34557336 cacttttaagatcgattgaaccgatttaaaaaatgattgaacagatcttaaaaatgtc 34557393  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 4422822 - 4422878
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtg 215  Q
    |||||||||||||||||||| || ||||||||| | ||||| | ||||| |||||||    
T  4422822 acacttttaagatcggttgattcgacttaaaaagtgattgagccgatctaaaaagtg 4422878  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 15605407 - 15605463
Alignment:
Q  163 ttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    ||||||||||||||||||| ||| || || | ||||||||||||||| |||| ||||    
T  15605407 ttttaagatcggttgaatcgactgaagaagtgattgaactgatcttataagtatcag 15605463  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 35943552 - 35943602
Alignment:
Q  165 ttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtg 215  Q
    |||| ||||||||||   ||||||||||||||||||| |||||||||||||    
T  35943552 ttaaaatcggttgaactgacttaaaaaataattgaaccgatcttaaaagtg 35943602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 14105978 - 14106031
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaa 212  Q
    |||||||||||||||||  || ||||||||||| | ||||||| ||||||||||    
T  14105978 acacttttaagatcggtcaaaccaacttaaaaagtgattgaaccgatcttaaaa 14106031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 23311834 - 23311781
Alignment:
Q  159 acacttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaa 212  Q
    ||||||||||||| |||||||   ||||||||||||||| ||| ||||||||||    
T  23311834 acacttttaagattggttgaactgacttaaaaaataatttaaccgatcttaaaa 23311781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 35895090 - 35895034
Alignment:
Q  163 ttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtgtcag 219  Q
    ||||||||||| ||||  | ||||||||| ||||| ||||||||| |||||||||||    
T  35895090 ttttaagatcgattgacccgacttaaaaagtaatttaactgatctaaaaagtgtcag 35895034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 16386 - 16334
Alignment:
Q  163 ttttaagatcggttgaatcaacttaaaaaataattgaactgatcttaaaagtg 215  Q
    ||||||||||||||||| | | ||||||| ||||||||| | |||||||||||    
T  16386 ttttaagatcggttgaaccgatttaaaaagtaattgaaccggtcttaaaagtg 16334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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