View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10042_low_6 (Length: 401)

Name: NF10042_low_6
Description: NF10042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10042_low_6
NF10042_low_6
[»] chr8 (9 HSPs)
chr8 (73-231)||(1344030-1344188)
chr8 (73-231)||(1355399-1355557)
chr8 (277-384)||(1344238-1344345)
chr8 (277-330)||(1355296-1355349)
chr8 (79-219)||(1361146-1361280)
chr8 (74-115)||(1350489-1350530)
chr8 (82-110)||(1350575-1350603)
chr8 (128-180)||(1350615-1350667)
chr8 (268-313)||(1361280-1361329)
[»] chr3 (1 HSPs)
chr3 (73-232)||(24618418-24618577)
[»] chr2 (1 HSPs)
chr2 (90-168)||(43364462-43364540)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 1344030 - 1344188
Alignment:
Q  73 tgatcttgtggttgagtttgatgatgagattgatcaggccttacaggaaagaattgacagggaagtcgaagaatttgcacgcagattaaattgttcttgg 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1344030 tgatcttgtggttgagtttgatgatgagattgatcaggccttacaggaaagaattgacagggaagtcgaagaatttgcacgcagattaaattgttcttgg 1344129  T
Q  173 gaagagagnnnnnnngaaattcttagagatgctggcaatcacagggaaattattgcata 231  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  1344130 gaagagagaaaaaaagaaattcttagagatgctggcaatcacagggaaattattgcata 1344188  T

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Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 1355557 - 1355399
Alignment:
Q  73 tgatcttgtggttgagtttgatgatgagattgatcaggccttacaggaaagaattgacagggaagtcgaagaatttgcacgcagattaaattgttcttgg 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1355557 tgatcttgtggttgagtttgatgatgagattgatcaggccttacaggaaagaattgacagggaagtcgaagaatttgcacgcagattaaattgttcttgg 1355458  T
Q  173 gaagagagnnnnnnngaaattcttagagatgctggcaatcacagggaaattattgcata 231  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  1355457 gaagagagaaaaaaagaaattcttagagatgctggcaatcacagggaaattattgcata 1355399  T

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Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 1344238 - 1344345
Alignment:
Q  277 cttatggacaaaactcttctcaatattagcaaatcttgttcaggataagaaatctgatatgaaaaataaattttgcgttttacgggttataattatcatg 376  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||||||||||    
T  1344238 cttatggacaaaactcttcttaatattagcaaatcttgttcaggattagaaatctgatatgaaaaataaattttgagttttacagattataattatcatg 1344337  T
Q  377 ctaatgct 384  Q
    ||||||||    
T  1344338 ctaatgct 1344345  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 1355349 - 1355296
Alignment:
Q  277 cttatggacaaaactcttctcaatattagcaaatcttgttcaggataagaaatc 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1355349 cttatggacaaaactcttctcaatattagcaaatcttgttcaggattagaaatc 1355296  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 1361146 - 1361280
Alignment:
Q  79 tgtggttgagtttgatgatgagattgatcaggccttacaggaaagaattgacagggaagtcgaagaatttgcacgcagattaaattgttcttgggaagag 178  Q
    |||||||||||||||||||||||||||||| | ||||  |      | |||||  ||||| ||||||||||| ||||||||||||||| || | ||||||    
T  1361146 tgtggttgagtttgatgatgagattgatcatgacttaatg------actgacaaagaagtggaagaatttgcgcgcagattaaattgtactcgcgaagag 1361239  T
Q  179 agnnnnnnngaaattcttagagatgctggcaatcacaggga 219  Q
    ||       |||||||||||||||  || ||||||||||||    
T  1361240 agaataaaagaaattcttagagattgtgacaatcacaggga 1361280  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 1350489 - 1350530
Alignment:
Q  74 gatcttgtggttgagtttgatgatgagattgatcaggcctta 115  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  1350489 gatcatgtggttgagtttgatgataagattgatcaggcctta 1350530  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 1350575 - 1350603
Alignment:
Q  82 ggttgagtttgatgatgagattgatcagg 110  Q
    |||||||||||||||||||||||||||||    
T  1350575 ggttgagtttgatgatgagattgatcagg 1350603  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 1350615 - 1350667
Alignment:
Q  128 gacagggaagtcgaagaatttgcacgcagattaaattgttcttgggaagagag 180  Q
    ||||| ||||| ||||||||||| ||||||||||||||  ||| |||||||||    
T  1350615 gacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagag 1350667  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 1361280 - 1361329
Alignment:
Q  268 atgagtaaccttatggacaaaactcttctcaa----tattagcaaatctt 313  Q
    ||||||||||||||||| ||||||||||||||    ||||||||||||||    
T  1361280 atgagtaaccttatggataaaactcttctcaacaattattagcaaatctt 1361329  T

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Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 24618418 - 24618577
Alignment:
Q  73 tgatcttgtggttgagtttgatgatgagattgatcaggccttacaggaaagaattgacagggaagtcgaagaatttgcacgcagattaaattgttcttgg 172  Q
    ||||| ||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||| |||||    
T  24618418 tgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaactgtgcttgg 24618517  T
Q  173 gaagagagnnnnnnngaaattcttagagatgctggcaatcacagggaaattattgcatag 232  Q
    ||||||||       ||||||||||||| |||||||||||||| ||||||||||||||||    
T  24618518 gaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattgcatag 24618577  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 43364540 - 43364462
Alignment:
Q  90 ttgatgatgagattgatcaggccttacaggaaagaattgacagggaagtcgaagaatttgcacgcagattaaattgttc 168  Q
    |||||||||||||||||| ||||||||| | ||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  43364540 ttgatgatgagattgatccggccttacaagcaagaattgatagggaagtggaagaatttgcccgcagattaaattgttc 43364462  T

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