View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10042_low_9 (Length: 357)
Name: NF10042_low_9
Description: NF10042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10042_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 49070362 - 49070569
Alignment:
| Q |
22 |
cacttgttgcattggatggatcggttagtcactatcatatctatttgtttttatcttaataatgaaactttgttttccgtttcaattgaaggatgttggt |
121 |
Q |
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| T |
49070362 |
cacttgctgcgttggatggatcggttagtcactatcatatctatttgtttttatcttaataatgaaactttgttttccgtttcaattgaaggatgttggt |
49070461 |
T |
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| Q |
122 |
gggcgtgaaatgctggttaaattttctgttgagacattgaactcgcctcccatgagaagaagaacaatatactatgaaggtcctcataaggtgtatgttg |
221 |
Q |
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| T |
49070462 |
gggcgtgaaatgctggttaaattttctgttgagacattgaactcgcctcctatgagaagaagaacaatatactatgaaggtcctcataaggtgtatgttg |
49070561 |
T |
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| Q |
222 |
ggaatctt |
229 |
Q |
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| T |
49070562 |
ggaatctt |
49070569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 49070566 - 49070650
Alignment:
| Q |
264 |
tctttggtaaatttggaaatgtggctagtgtgagggtgttgcaagatttgaatcagggg-gaaaaaagccgtgtctatgcctttg |
347 |
Q |
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| T |
49070566 |
tctttggtaaatttggaaatgtggctagtgtgagggtgttgcaagatttgaatcaggggaaaaaaaagccgtgtctatgcctttg |
49070650 |
T |
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