View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10043_3 (Length: 372)
Name: NF10043_3
Description: NF10043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10043_3 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 231 - 361
Target Start/End: Original strand, 50632529 - 50632659
Alignment:
| Q |
231 |
attattgttgtcacatgtaagttgtttgttgctttttgtaaccatgggctttgagtcgacatagtgattttaaggttaaaccccctttcatgtcacggat |
330 |
Q |
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| T |
50632529 |
attattgttgtcacatgtaagttgtttgttgctttttgtaaccatgggctttgagtcgacatagtgattttaaggttaaaccccctttcatgtcacggat |
50632628 |
T |
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| Q |
331 |
agcttgtttattgttgaccacacaggttctg |
361 |
Q |
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| T |
50632629 |
agcttgtttattgttgaccacacagtttctg |
50632659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 50632282 - 50632421
Alignment:
| Q |
20 |
aaaaaggacacacaagttgatgttttcttcattttctctttcaactagaattcaagagt---gtgtttgtttttgttgaatgaatgaatgaccaatgttt |
116 |
Q |
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| T |
50632282 |
aaaaaggacacacaagttgatgttttcttcattttctctttcaactacaattcaagagtagtgtgtttgtttttgtggaatgaatgaatgaccaatgttt |
50632381 |
T |
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| Q |
117 |
tcacttggctgctatttaaggtagtttggtcggtgagcta |
156 |
Q |
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| T |
50632382 |
tcacttggctgctatttaaggtagtttggtcggtgagcta |
50632421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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