View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10043_low_3 (Length: 248)
Name: NF10043_low_3
Description: NF10043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10043_low_3 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 4244037 - 4243807
Alignment:
| Q |
18 |
agagatatggtgattcgggttgattggttgagtttttgcactttgcatgcaactccattcatgaagagtgtcctttgctcgagagatggtgattgcggtt |
117 |
Q |
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| T |
4244037 |
agagatatggtgattcgggttgattggttgagtttttgcactttgcatgcaactccattcatgaagagtgtcctttgctcgagagatggtgattgcggtt |
4243938 |
T |
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| Q |
118 |
gtcgtgtccgtggaatcccataatttgatgttgcgacttttccaaaggctccataagagcatgccggctgcttgttgttgttgagagcataatctgtgca |
217 |
Q |
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| T |
4243937 |
gtcgtgtccgtggaatcccataatttgatgttgcgacttttccaaaggctccataagagcatgccggctgcttgttgttgttgagagcataatctgtgca |
4243838 |
T |
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| Q |
218 |
taaagtcaaacaacaatgtagtaaagttgtt |
248 |
Q |
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| T |
4243837 |
taaagtcaaacaacaatgtagtaaagttgtt |
4243807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 33495539 - 33495769
Alignment:
| Q |
18 |
agagatatggtgattcgggttgattggttgagtttttgcactttgcatgcaactccattcatgaagagtgtcctttgctcgagagatggtgattgcggtt |
117 |
Q |
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| T |
33495539 |
agagatatgatgatccgggtttagtggctaagtttttgctctttgcatgcaattccattcatgaagagtgtcatttgctcgagagatggtgattgtggtt |
33495638 |
T |
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| Q |
118 |
gtcgtgtccgtggaatcccataatttgatgttgcgacttttccaaaggctccataagagcatgccggctgcttgttgttgttgagagcataatctgtgca |
217 |
Q |
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| T |
33495639 |
tctgtctccgtggaatcccataatttgatgttgcgacttttccaaaggctccacaagagcatgccggctgtttgttgttgttgagaggataatctgtgcg |
33495738 |
T |
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| Q |
218 |
taaagtcaaacaacaatgtagtaaagttgtt |
248 |
Q |
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| T |
33495739 |
taaagtcaaacaacaatgtagtaaagttgtt |
33495769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 45187652 - 45187604
Alignment:
| Q |
52 |
tttgcactttgcatgcaactccattcatgaagagtgtcctttgctcgag |
100 |
Q |
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| T |
45187652 |
tttgctctttgcatacaactccattcgttgagagtgtcctttgctcgag |
45187604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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