View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10044_10 (Length: 304)
Name: NF10044_10
Description: NF10044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10044_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 44568475 - 44568185
Alignment:
| Q |
14 |
tactaaaaagcacggtaaagccctacaaagagacctagaactagttataactaactagtaactatattaatcaatatcaaactagttccaataaatctct |
113 |
Q |
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| T |
44568475 |
tactaaaaagcacggtaaagccctacaaagagacctagaactagttataactaactagtaactatattaatcaatatcaaactagttccaataaatctct |
44568376 |
T |
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| Q |
114 |
aactatatgaaaaatagtctacccatgaaacaatacgagacctaaactgaggcggtacctcggacagttgaacaacattcatatactgaacatgatcaac |
213 |
Q |
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| T |
44568375 |
aactatatgaaaaatagtctacccatgaaacaatacgagacctaaactgaggcggtacctcggacagttgaaaaacattcatatactgaacatgatcaac |
44568276 |
T |
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| Q |
214 |
taacgagagcactgtcactcagaagccaacccacttcacccatcggaaacaccgaccaactctcgccggaaacccatattcactaacaatg |
304 |
Q |
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| T |
44568275 |
taacgagagcactgtcactcagaagccaacccacttcacccatcggaaacaccgaccaactctcgccggcaacccatattcactaacaatg |
44568185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 277
Target Start/End: Original strand, 36027201 - 36027345
Alignment:
| Q |
132 |
ctacccatgaaacaatacgagacctaaactgaggcggtacctcggacagttgaacaacattcatatactgaacatgatcaactaacgagagcactgtcac |
231 |
Q |
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|||||||| ||||| |||||| || ||||| | ||||||| |||||||||| | |||||||||||| || ||| ||| | ||||||| |||||| |
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| T |
36027201 |
ctacccattcaacaaaacgagatctggactgatgtggtaccttggacagttga-cgacattcatataccaaaaatggtcagccaacgagactcctgtcat |
36027299 |
T |
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| Q |
232 |
tcagaagccaacccacttcacccatcggaaacaccgaccaactctc |
277 |
Q |
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| T |
36027300 |
tcacagaccaacccacttcacccatctgaaaatccgaccaactctc |
36027345 |
T |
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