View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10044_11 (Length: 301)
Name: NF10044_11
Description: NF10044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10044_11 |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0231 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 26227660 - 26227372
Alignment:
| Q |
13 |
tgagaaggtgacatggacattcttggtatatatgttaggttgccaacatttttacctgaaatgatcttagcttcaattacatgattagccatcctagtaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26227660 |
tgagaaggtgacatggacattcttggtatatatgttaggttgccaacatttttacctgaaatgatcttagcttcaatcacatgattagccatcctagtaa |
26227561 |
T |
|
| Q |
113 |
caattagtcgagtaccattgcataatccctctacttgatctaaatttcttaataacattataggagtcccaactttcagtttaattttatggtttggaag |
212 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
26227560 |
caattagtcgagtaccgttgcataatccctctacttgatctaaatttctcaatagcattataggagttccaacttttagtttaattttatggtttggaag |
26227461 |
T |
|
| Q |
213 |
tcctgaagttcttaatgtacttaagaattctggagtgaataactgaaaagaccggcgttggtcgttaacttctgacctgtctatggaat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
26227460 |
tcctgaagttcttaatgtacttaagaattctggagtgaataactgaaaagactggcattggtcgttaacttctgacctgtctatggaat |
26227372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 33547226 - 33546938
Alignment:
| Q |
13 |
tgagaaggtgacatggacattcttggtatatatgttaggttgccaacatttttacctgaaatgatcttagcttcaattacatgattagccatcctagtaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33547226 |
tgagaaggtgacatggacattcttggtatatatgttaggttgccaacatttttacctgaaatgatcttagcttcaatcacatgattagccatcctagtaa |
33547127 |
T |
|
| Q |
113 |
caattagtcgagtaccattgcataatccctctacttgatctaaatttcttaataacattataggagtcccaactttcagtttaattttatggtttggaag |
212 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
33547126 |
caattagtcgagtaccgttgcataatccctctacttgatctaaatttctcaatagcattataggagttccaacttttagtttaattttatggtttggaag |
33547027 |
T |
|
| Q |
213 |
tcctgaagttcttaatgtacttaagaattctggagtgaataactgaaaagaccggcgttggtcgttaacttctgacctgtctatggaat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |
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| T |
33547026 |
tcctgaagttcttaatgtacttaagaattctggagtgaataactgaaaagactggcattgatcgttaacttctgacctgtctatggaat |
33546938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 4258163 - 4258244
Alignment:
| Q |
60 |
atttttacctgaaatgatcttagcttcaattacatgattagccatcctagtaacaattagtcgagtaccattgcataatccc |
141 |
Q |
| |
|
|||| ||||||| ||||| || ||||||| ||||| || ||||| ||||||| ||| |||| ||||||||||||||||||| |
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| T |
4258163 |
atttgtacctgacatgattttcgcttcaagaacatggttggccattctagtaataataagtctagtaccattgcataatccc |
4258244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 11236387 - 11236327
Alignment:
| Q |
151 |
tctaaatttcttaataacattataggagtcccaactttcagtttaattttatggtttggaa |
211 |
Q |
| |
|
|||||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||||| |
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| T |
11236387 |
tctaaattccttaacaacatgatagggactccaactttcagcttaattttatggtttggaa |
11236327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 129888 - 129600
Alignment:
| Q |
13 |
tgagaaggtgacatggacattcttggtatatatgttaggttgccaacatttttacctgaaatgatcttagcttcaattacatgattagccatcctagtaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
129888 |
tgagaaggtgacatggacattcttggtatatatgttaggttgccaacatttttacctgaaatgatcttagcttcaatcacatgattagccatcctagtaa |
129789 |
T |
|
| Q |
113 |
caattagtcgagtaccattgcataatccctctacttgatctaaatttcttaataacattataggagtcccaactttcagtttaattttatggtttggaag |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||| |
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| T |
129788 |
caattagtcgagtaccgttgcataatccctctacttgatctaaatttcttaatagcattataggagttctaacttttagtttaattttatggtttggaag |
129689 |
T |
|
| Q |
213 |
tcctgaagttcttaatgtacttaagaattctggagtgaataactgaaaagaccggcgttggtcgttaacttctgacctgtctatggaat |
301 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
129688 |
tcctgaagttcttaatttacttaagaattctagagtgaataactgaaaagactggcattggtcgttaacttctgacctgtctatggaat |
129600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 23965639 - 23965926
Alignment:
| Q |
13 |
tgagaaggtgacatggacattcttggtatatatgttaggttgccaacatttttacctgaaatgatcttagcttcaattacatgattagccatcctagtaa |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23965639 |
tgagaaagtgacatggacattcttggtatatatgttaggttgccaacatttttacctgaaatgatcttagcttcaatcacatgattagccatcctagtaa |
23965738 |
T |
|
| Q |
113 |
caattagtcgagtaccattgcataatccctctacttgatctaaatttcttaataacattataggagtcccaactttcagtttaattttatggtttggaag |
212 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23965739 |
caattagtcaagtaccgttgcataatccctctacttgatctaaatttcttaatagcattataggagtcccaactttcagtttaattttatggtttggaag |
23965838 |
T |
|
| Q |
213 |
tcctgaagttcttaatgtacttaagaattctggagtgaataactgaaaagaccggcgttggtcgttaacttctgacctgtctatggaat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||| |||||||||| |
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| T |
23965839 |
tcctgaagttcttaatgtacttaagaattctggagtgaataactgaaaagactggcattgatcgttaactt-tgacctatctatggaat |
23965926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 25807149 - 25807217
Alignment:
| Q |
120 |
tcgagtaccattgcataatccctctacttgatctaaatttcttaataacattataggagtcccaacttt |
188 |
Q |
| |
|
|||||| |||||||| || || || ||||||||||||| ||||| |||||||| || ||||||||||| |
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| T |
25807149 |
tcgagttccattgcacaaaccttcggcttgatctaaattccttaacaacattatcggtgtcccaacttt |
25807217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 194
Target Start/End: Complemental strand, 22322382 - 22322264
Alignment:
| Q |
76 |
atcttagcttcaattacatgattagccatcctagtaacaattagtcgagtaccattgcataatccctctacttgatctaaatttcttaataacattatag |
175 |
Q |
| |
|
||||| || ||||| ||||||||||| | ||| || || ||| |||||| ||||||||||| || ||| ||||||||||||||||||| |||||||| | |
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|
| T |
22322382 |
atcttggcctcaataacatgattagcaagccttgtgactgttaatcgagttccattgcataagccttctgcttgatctaaatttcttaacaacattattg |
22322283 |
T |
|
| Q |
176 |
gagtcccaactttcagttt |
194 |
Q |
| |
|
| || |||||||| ||||| |
|
|
| T |
22322282 |
gtgttccaactttgagttt |
22322264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 20534696 - 20534777
Alignment:
| Q |
60 |
atttttacctgaaatgatcttagcttcaattacatgattagccatcctagtaacaattagtcgagtaccattgcataatccc |
141 |
Q |
| |
|
|||| ||||||| ||||| || ||||||| ||||| || ||||| ||||||| ||| |||| ||||||||||||||||||| |
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|
| T |
20534696 |
atttgtacctgacatgattttcgcttcaagaacatggttggccattctagtaataataagtctagtaccattgcataatccc |
20534777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 9352 - 9278
Alignment:
| Q |
120 |
tcgagtaccattgcataatccctctacttgatctaaatttcttaataacattataggagtcccaactttcagttt |
194 |
Q |
| |
|
|||||| ||||||||||| || ||| ||||||||||||| |||||||||||||| || || |||||||| ||||| |
|
|
| T |
9352 |
tcgagttccattgcataagccatctgcttgatctaaattccttaataacattattggtgttccaactttgagttt |
9278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 21901133 - 21901214
Alignment:
| Q |
60 |
atttttacctgaaatgatcttagcttcaattacatgattagccatcctagtaacaattagtcgagtaccattgcataatccc |
141 |
Q |
| |
|
|||| ||||||| ||||| || ||||||| ||||| || ||||| ||||||| ||| |||| ||||||||||||||||||| |
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|
| T |
21901133 |
atttgtacctgacatgattttcgcttcaagaacatggttggccattctagtaataataagtctagtaccattgcataatccc |
21901214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 1370802 - 1370914
Alignment:
| Q |
82 |
gcttcaattacatgattagccatcctagtaacaattagtcgagtaccattgcataatccctctacttgatctaaatttcttaataacattataggagtcc |
181 |
Q |
| |
|
|||||||| |||||||| || | ||| || || |||| |||||| ||||| || || || || ||||||||| ||| |||||||||||||| || |||| |
|
|
| T |
1370802 |
gcttcaatgacatgatttgcaagccttgtgactattaatcgagttccattacacaaaccttcagcttgatctatattccttaataacattattggtgtcc |
1370901 |
T |
|
| Q |
182 |
caactttcagttt |
194 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
1370902 |
caactttgagttt |
1370914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 248
Target Start/End: Original strand, 149314 - 149486
Alignment:
| Q |
76 |
atcttagcttcaattacatgattagccatcctagtaacaattagtcgagtaccattgcataatccctctacttgatctaaatttcttaataacattatag |
175 |
Q |
| |
|
||||| ||||| ||||||||| | |||| | | |||||||| | || ||||||||| || || || || |||||| ||||| || || | |||||| | |
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|
| T |
149314 |
atctttgcttctattacatgagttgccagctttgtaacaatcattctagtaccattacacaacccttcagtttgatccaaattcctcaaaagcattattg |
149413 |
T |
|
| Q |
176 |
gagtcccaactttcagtttaattttatggtttggaagtcctgaagttcttaatgtacttaagaattctggagt |
248 |
Q |
| |
|
||| |||||||| | ||| |||| ||| ||||||||||||||||| | ||||| |||| ||||||||||| |
|
|
| T |
149414 |
gagctccaacttttaatttgatttgatgatttggaagtcctgaagtgcgtaatgagcttagaaattctggagt |
149486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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