View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10044_3 (Length: 547)
Name: NF10044_3
Description: NF10044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10044_3 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 26 - 539
Target Start/End: Original strand, 33726165 - 33726686
Alignment:
| Q |
26 |
tgaaccacacttattcgaacaactcactcactcctttccatgtatatgtgcataataatcgatgaaaatggacgtctctttgcgatatggaagaattatt |
125 |
Q |
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| T |
33726165 |
tgaaccacacttattcgaacaactcactcactcctttccatgtatatgtgcataataatcgatgaaaatggacgtctctttgcgatatggaagaattatt |
33726264 |
T |
|
| Q |
126 |
actatgtgaccatatcgtcatagatgacttcacttatataaatggattagtcttttcatgaactctttttcattggaaattcctataagaatttcttata |
225 |
Q |
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||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33726265 |
actatgtgaccatctcgtcatatatgacttgacttatataaatggattagtcttttcatgaactctttttcattggaaattcctatacgaatttcttata |
33726364 |
T |
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| Q |
226 |
ttgtggtttcttgaatccatttatgaaagctggat-----tttaagttacatgagtggcactgaaggtcactttcggaactcatattccttatggtcctc |
320 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33726365 |
ttgtggtttcttgaatccatttatgaaagctggattttaatttaagttacatgagtggcactgaaggtcactttcggaactcatattccttatggtcctc |
33726464 |
T |
|
| Q |
321 |
tctctcc--nnnnnnnnnactgggttctattccttatggtcttatactcttattaccacttttcttattctccatat---gttacttcatagaactatgg |
415 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33726465 |
tctctcctttttttttttactgggttctattccttatggtcttatactcttattaccacttttcttattctccatattacgttacttcatagaactatgg |
33726564 |
T |
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| Q |
416 |
aatatacaaagtctccttgatgatgtccatctcattgatgggaccaggctaatcaaccaagtcacgagtggaatttcctgttttatcaccaaagtggatt |
515 |
Q |
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||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33726565 |
aatatacaaagtctccttggtgatg-gcatct-ttttatgggaccaggctaatcaaccaagtcacgagtggaatttcctgttttatcaccaaagtggatt |
33726662 |
T |
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| Q |
516 |
agctttaatatgacgtttcatctc |
539 |
Q |
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|||||||||||||||||||||||| |
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| T |
33726663 |
agctttaatatgacgtttcatctc |
33726686 |
T |
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